Updated Nov 1, 2017.


Articles in refereed journals

(selected to show work from my students, from 272 career total as of Nov 1, 2017)

2017

Albaugh, M.D., Nguyen, T.V., Ducharme, S., Collins, D.L., Botteron, K.N., D’Alberto, N., Evans, A.C., Karama, S., Hudziak, J.J. and Brain Development Cooperative Group, 2017. Age-related volumetric change of limbic structures and subclinical anxious/depressed symptomatology in typically developing children and adolescents. Biological Psychology124, pp.133-140. (pdf)

Aubert-Broche, B., Weier, K., Longoni, G., Fonov, V.S., Bar-Or, A., Marrie, R.A., Yeh, E.A., Narayanan, S., Arnold, D.L., Verhey, L.H., Banwell, B. and Collins, DL, 2017. Monophasic demyelination reduces brain growth in children. Neurology88(18), pp.1744-1750. (pdf)

Bosco P, Redolfi A, Bocchetta M, Ferrari C, Mega A, Galluzzi S, Austin M, Chincarini A, Collins DL, Duchesne S, Maréchal B, Roche A, Sensi F, Wolz R, Alegret M, Assal F, Balasa M, Bastin C, Bougea A, Emek-Savaş DD, Engelborghs S, Grimmer T, Grosu G, Kramberger MG, Lawlor B, Mandic Stojmenovic G, Marinescu M, Mecocci P, Molinuevo JL, Morais R, Niemantsverdriet E, Nobili F, Ntovas K, O’Dwyer S, Paraskevas GP, Pelini L, Picco A, Salmon E, Santana I, Sotolongo-Grau O, Spiru L, Stefanova E, Popovic KS, Tsolaki M, Yener GG, Zekry D, Frisoni GB., 2017. The impact of automated hippocampal volumetry on diagnostic confidence in patients with suspected Alzheimer’s disease: An EADC study. Alzheimer’s & Dementia.  (pdf)

Dadar, M., Maranzano, J., Misquitta, K., Anor, C.J., Fonov, V.S., Tartaglia, M.C., Carmichael, O.T., Decarli, C., Collins, D.L. and Alzheimer’s Disease Neuroimaging Initiative, 2017. Performance comparison of 10 different classification techniques in segmenting white matter hyperintensities in aging. NeuroImage157, pp.233-249.  (pdf)

Dadar, M., Pascoal, T.A., Manitsirikul, S., Misquitta, K., Tartaglia, C., Brietner, J., Rosa-Neto, P., Carmichael, O., DeCarli, C. and Collins, D.L., 2017. Validation of a Regression Technique for Segmentation of White Matter Hyperintensities in Alzheimer’s Disease. IEEE Transactions on Medical Imaging. 2017 Aug;36(8):1758-1768  (pdf)

Das S, Glatard T, Rogers C, Saigle J, Paiva S, MacIntyre L, Safi-Harab M, Rousseau ME, Stirling J, Khalili-Mahani N, MacFarlane D, Kostopoulos P, Rioux P, Madjar C, Lecours-Boucher X, Vanamala S, Adalat R, Mohaddes Z, Fonov VS, Milot S, Leppert I, Degroot C, Durcan TM, Campbell T, Moreau J, Dagher A, Collins DL, Karamchandani J, Bar-Or A, Fon EA, Hoge R, Baillet S, Rouleau G, Evans AC., 2017. Cyberinfrastructure for Open Science at the Montreal Neurological Institute. Frontiers in neuroinformatics10, p.53.  (pdf)

Drouin, S., Kochanowska, A., Kersten-Oertel, M., Gerard, I.J., Zelmann, R., De Nigris, D., Bériault, S., Arbel, T., Sirhan, D., Sadikot, A.F., Hall, J.A., and Collins, D.L., 2017. IBIS: an OR ready open-source platform for image-guided neurosurgery. International journal of computer assisted radiology and surgery12(3), pp.363-378.  (pdf)

De Leener, B., Fonov, V.S., Collins, D.L., Callot, V., Stikov, N. and Cohen-Adad, J., 2017. PAM50: Unbiased multimodal template of the brainstem and spinal cord aligned with the ICBM152 space. NeuroImage. 2017 Oct 21;165:170-179  (pdf)

Ewert, S., Plettig, P., Li, N., Chakravarty, M., Collins, L., Herrington, T., Kühn, A. and Horn, A., 2017. Toward defining deep brain stimulation targets in MNI space: A subcortical atlas based on multimodal MRI, histology and structural connectivity. NeuroImage. 2017 May 20. pii: S1053-8119(17)30407-X.  (pdf)

Gerard, I.J., Kersten-Oertel, M., Petrecca, K., Sirhan, D., Hall, J.A. and Collins, D.L., 2017. Brain shift in neuronavigation of brain tumors: A review. Medical image analysis35, pp.403-420.  (pdf)

Hazlett HC, Gu H, Munsell BC, Kim SH, Styner M, Wolff JJ, Elison JT, Swanson MR, Zhu H, Botteron KN, Collins DL, Constantino JN, Dager SR, Estes AM, Evans AC, Fonov VS, Gerig G, Kostopoulos P, McKinstry RC, Pandey J, Paterson S, Pruett JR, Schultz RT, Shaw DW, Zwaigenbaum L, Piven J; IBIS Network; Clinical Sites; Data Coordinating Center; Image Processing Core; Statistical Analysis.2017. Early brain development in infants at high risk for autism spectrum disorder. Nature542(7641), pp.348-351.  (pdf)

Lewis JD, Evans AC, Pruett JR Jr, Botteron KN, McKinstry RC, Zwaigenbaum L, Estes AM, Collins DL, Kostopoulos P, Gerig G, Dager SR, Paterson S, Schultz RT, Styner MA, Hazlett HC, Piven J; Infant Brain Imaging Study Network., 2017. The Emergence of Network Inefficiencies in Infants With Autism Spectrum Disorder. Biological psychiatry 82(3):176-185.  (pdf)

Nguyen, T.V., Wu, M., Lew, J., Albaugh, M.D., Botteron, K.N., Hudziak, J.J., Fonov, V.S., Collins, D.L., Campbell, B.C., Booij, L. and Herba, C., 2017. Dehydroepiandrosterone impacts working memory by shaping cortico-hippocampal structural covariance during development. Psychoneuroendocrinology86, pp.110-121.  (pdf)

Nguyen, T.V., Lew, J., Albaugh, M.D., Botteron, K.N., Hudziak, J.J., Fonov, V.S., Collins, D.L., Ducharme, S. and McCracken, J.T., 2017. Sex-specific associations of testosterone with prefrontal-hippocampal development and executive function. Psychoneuroendocrinology76, pp.206-217.  (pdf)

Pruessner, M., Bechard-Evans, L., Pira, S., Joober, R., Collins, D.L., Pruessner, J.C. and Malla, A.K., 2017. Interplay of hippocampal volume and hypothalamus-pituitary-adrenal axis function as markers of stress vulnerability in men at ultra-high risk for psychosis. Psychological medicine47(3), pp.471-483.  (pdf)

Sanford, R., Cruz, A.L.F., Scott, S.C., Mayo, N.E., Fellows, L.K., Ances, B.M. and Collins, D.L., 2017. Regionally specific brain volumetric and cortical thickness changes in HIV-infected Patients in the HAART era. JAIDS Journal of Acquired Immune Deficiency Syndromes74(5), pp.563-570.  (pdf)

Sanford R, Fellows LK, Ances BM, Collins DL. Association of Brain Structure Changes and Cognitive Function With Combination Antiretroviral Therapy in HIV-Positive Individuals. JAMA Neurol. 2017 Nov 13 (pdf)

Schoemaker, D., Poirier, J., Collins, D.L., Gauthier, S. and Pruessner, J.C., 2017. Familiarity deficits in cognitively normal aging individuals with APOE ε4: A follow-up investigation of medial temporal lobe structural correlates. Alzheimer’s & Dementia: Diagnosis, Assessment & Disease Monitoring. 2017 Jun 15;9:21-24  (pdf)

Schoemaker, D., Mascret, C., Collins, D.L., Yu, E., Gauthier, S. and Pruessner, J.C., 2017. Recollection and familiarity in aging individuals: Gaining insight into relationships with medial temporal lobe structural integrity. Hippocampus27(6), pp.692-701.  (pdf)

Shen MD, Kim SH, McKinstry RC, Gu H, Hazlett HC, Nordahl CW, Emerson RW, Shaw D, Elison JT, Swanson MR, Fonov VS, Gerig G, Dager SR, Botteron KN, Paterson S, Schultz RT, Evans AC, Estes AM, Zwaigenbaum L, Styner MA, Amaral DG, Piven J; Infant Brain Imaging Study Network; Infant Brain Imaging Study Network, The Infant Brain Imaging Study (IBIS) Network is a National Institutes of Health–funded Autism Center of Excellence project and consists of a consortium of eight universities in the United States and Canada, Piven J, Hazlett HC, Chappell C, Dager S, Estes A, Shaw D, Botteron K, McKinstry R, Constantino J, Pruett J, Schultz R, Zwaigenbaum L, Elison J, Evans AC, Collins DL, Pike GB, Fonov V, Kostopoulos P, Das S, Gerig G, Styner M, Gu H., 2017. Increased extra-axial cerebrospinal fluid in high-risk infants who later develop autism. Biological psychiatry82(3), pp.186-193.  (pdf)

Tuwaig, M., Savard, M., Jutras, B., Poirier, J., Collins, D.L., Rosa-Neto, P., Fontaine, D. and Breitner, J., 2017. Deficit in Central Auditory Processing as a Biomarker of Pre-Clinical Alzheimer’s Disease. Journal of Alzheimer’s Disease, (Preprint), pp.1-12. 2017 Oct 3  (pdf)

Valk, S.L., Bernhardt, B.C., Trautwein, F.M., Böckler, A., Kanske, P., Guizard, N., Collins, D.L. and Singer, T., 2017. Structural plasticity of the social brain: Differential change after socio-affective and cognitive mental training. Science Advances3(10), p.e1700489.  (pdf)

Xiao, Y., Fonov, V., Chakravarty, M.M., Beriault, S., Al Subaie, F., Sadikot, A., Pike, G.B., Bertrand, G. and Collins, D.L., 2017. A dataset of multi-contrast population-averaged brain MRI atlases of a Parkinson׳ s disease cohort. Data in Brief12, pp.370-379.  (pdf, website)

Zandifar, A., Fonov, V., Coupé, P., Pruessner, J., Collins, D.L. and Alzheimer’s Disease Neuroimaging Initiative, 2017. A comparison of accurate automatic hippocampal segmentation methods. NeuroImage. 2017 Jul 15;155:383-393.  (pdf)

 

2016

Akbar N, Till C, Sled JG, Binns MA, Doesburg SM, Aubert-Broche B, Collins DL, Araujo D, Narayanan S, Arnold DL, Lysenko M, Banwell B, “Altered resting-state functional connectivity in cognitively preserved pediatric-onset MS patients and relationship to structural damage and cognitive performance”, Mult Scler, 2016 May,22(6):792-800. (pdf)

S. Boucetta, A. Salimi, M. Dadar, B. E. Jones, D. L. Collins, and T. T. Dang-Vu, “Structural Brain Alterations Associated with Rapid Eye Movement Sleep Behavior Disorder in Parkinson’s Disease,” Sci Rep, vol. 6, p. 26782, 2016.(pdf)

Drouin S, Kochanowska A, Kersten-Oertel M, Gerard IJ, Zelmann R, De Nigris D, Bériault S, Arbel T, Sirhan D, Sadikot AF, Hall JA, Sinclair DS, Petrecca K, DelMaestro RF, Collins DL, “IBIS: an OR ready open-source platform for image-guided neurosurgery”, Int J Comput Assist Radiol Surg, 2016. (pdf)

I. J. Gerard, M. Kersten-Oertel, K. Petrecca, D. Sirhan, J. A. Hall, and D. L. Collins, “Brain shift in neuronavigation of brain tumors: A review,” Med Image Anal, vol. 35, pp. 403-420, Aug 24 2016. (pdf)

R. Giraud, VT. Ta, N. Papadakis, J.V. Manjón, D.L. Collins, P. Coupé, Alzheimer’s Disease Neuroimaging Initiative, “An optimized PatchMatch for multi-scale and multi-feature label fusion”, NeuroImage, 2016 Jan; 124:770–782. (pdf)

Kim SH, Lyu I, Fonov VS, Vachet C, Hazlett HC, Smith RG, Piven J, Dager SR, Mckinstry RC, Pruett JR Jr, Evans AC, Collins DL, Botteron KN, Schultz RT, Gerig G, Styner MA, “Development of cortical shape in the human brain from 6 to 24months of age via a novel measure of shape complexity”, NeuroImage, 2016 May; 3;135:163-176. (pdf)

T. V. Nguyen, P. Gower, M. D. Albaugh, K. N. Botteron, J. J. Hudziak, V. S. Fonov, et al., “The developmental relationship between DHEA and visual attention is mediated by structural plasticity of cortico-amygdalar networks,” Psychoneuroendocrinology, vol. 70, pp. 122-33, Aug 2016. (pdf)

R. D. Vincent, P. Neelin, N. Khalili-Mahani, A. L. Janke, V. S. Fonov, S. M. Robbins, et al., “MINC 2.0: A Flexible Format for Multi-Modal Images,” Front Neuroinform, vol. 10, p. 35, 2016. (pdf)

Weier K, Till C, Fonov V, Yeh EA, Arnold DL, Banwell B, Collins DL, “Contribution of the cerebellum to cognitive performance in children and adolescents with multiple sclerosis”, Mult Scler, 2016 Apr, 22(5):599-607. (pdf)

Xiao Y, Yan CX, Drouin S, De Nigris D, Kochanowska A, Collins DL, “User-friendly freehand ultrasound calibration using Lego bricks and automatic registration”, Int J Comput Assist Radiol Surg, 2016 Mar. (pdf)

 

2015

Ansado, J., Collins, L., Fonov, V., Garon, M., Alexandrov, L., Karama, S., … and Beauchamp, M. H. A new template to study callosal growth shows specific growth in anterior and posterior regions of the corpus callosum in early childhood. European Journal of Neuroscience. 2015 July; 42(1): 1675–1684. (pdf)

S. Beriault, Y. Xiao, D.L. Collins and G.B. Pike, “Automatic SWI Venography Segmentation Using Conditional Random Fields”, IEEE Transactions on Medical Imaging, 2015 Dec; 34(12):2478–2491.(pdf)

M. Boccardi, M. Bocchetta, F.C. Morency, D.L. Collins, M. Nishikawa, R. Ganzola, M.J. Grothe, D. Wolf, A. Redolfi, M. Pievani, L. Antelmi, A. Fellgiebel, H. Matsuda, S. Teipel, *S. Duchesne, C.R. Jack, G. B. Frisoni, “Training labels for hippocampal segmentation based on the EADC-ADNI harmonized hippocampal protocol”, Alzheimer’s & Dementia. 2015 Feb; 11(2): 175–183 (pdf)

D.M. Cash, C. Frost, L. O. Iheme, D. Ünay, M. Kandemir, J. Fripp, O. Salvado, P. Bourgeat, M. Reuter, B. Fischl, M. Lorenzi, G. B. Frisoni, X. Pennec, R. Pierson, J. L. Gunter, M. L. Senjem, C. R. Jack Jr, *N. Guizard, *V. S. Fonov, D. L. Collins, M. Modat, M. J. Cardoso, K. K. Leung, H. Wang, S. R. Das, P. A. Yushkevich, I. B. Malone, N. C. Fox, J. M. Schott, S. Ourselin. “Assessing atrophy measurement techniques in dementia: Results from the MIRIAD Atrophy Challenge”, NeuroImage, 2015 December; 123:149–164. (pdf)

M.M. Chakravarty, J. Rapoport, J. Giedd, A. Raznahan, P. Shaw, D.L. Collins, J. Lerch, and N. Gogtay, “Striatal shape abnormalities as novel neurodevelopmental endophenotypes in schizophrenia: a longitudinal study” Human Brain Mapping. 2015 April; 36(4): 1458–1469.(pdf)

Coupé P, Fonov VS, Bernard C, Zandifar A, Eskildsen SF, Helmer C, Manjón JV, Amieva H, Dartigues JF, Allard M, Catheline G, Collins DL. “Detection of Alzheimer’s disease signature in MR images seven years before conversion to dementia: Toward an early individual prognosis”, Human Brain Mapping. 2015 December; 36(12): 4758–70 (pdf)

Eskildsen SF, Coupé P, Fonov VS, Pruessner JC, Collins DL; Alzheimer’s Disease Neuroimaging Initiative. Structural imaging biomarkers of Alzheimer’s disease: predicting disease progression. Neurobiol Aging. 2015 Jan; 36: S23–31. (pdf)

Faridi N, Karama S, Burgaleta M, White MT, Evans AC, Fonov V, Collins DL, Waber DP. Neuroanatomical Correlates of Behavioral Rating Versus Performance Measures of Working Memory in Typically Developing Children and Adolescents. Neuropsychology. 2015 Jan; 29(1):82–91. (pdf)

R. Harmouche, N.K. Subbanna, D.L. Collins, D.L. Arnold, T. Arbel, “Probabilistic multiple sclerosis lesion classification based on modelling regional intensity variability and local neighbourhood information”, IEEE Transactions on Biomedical Engineering. 2015 May; 62(5): 1281–1292.(pdf)

I. Gerard and D. L. Collins, “An Analysis of Tracking Error in Image Guided Neurosurgery”, Int. J. Computer Assisted Radiology and Surgery. 2015, Oct; 10(10): 1579–88.(pdf)

Gerard IJ, Hall JA, Mok K, Collins DL, “New protocol for skin landmark registration in image-guided neurosurgery: Technical note”, Neurosurgery. 2015 Sept; 11 Suppl 3: 376–81.(pdf)

N. Guizard, V.S. Fonov, D. Garcia-Lorenzo, K. Nakamura, B. Aubert-Broche, D.L. Collins. “Spatio-temporal regularization for longitudinal registration to subject-specific 3D template”. PLoS ONE, 2015 Aug 24; 10(8): e0133352 (pdf)

N Guizard, P Coupé, V S Fonov, J V Manjón, D L Arnold, D.L. Collins, “Rotation-invariant multi-contrast non-local means for MS lesion segmentation (RMNMS)”, NeuroImage: Clinical. 2015 May 8: 376–89 (pdf)

S. A. Grover, B. Aubert-Broche, D. Fetco, D. L. Collins, D. L. Arnold, M. Finlayson, B. L. Banwell, R. W. Motl, E. A. Yeh, “Lower physical activity is associated with higher disease burden in pediatric multiple sclerosis”, Neurology, 2015 Nov 10; 85(19):1663–9.(pdf)

Z. Karimaghaloo, H. Rivas, D.L. Collins, D.L. Arnold, T. Arbel, “Temporal Hierarchical Adaptive Texture CRF for Automatic Detection of Gadolinium-Enhancing Multiple Sclerosis Lesions in Brain MRI”, IEEE Transactions on Medical Imaging. 2015 June; 34(6): 1227–1241. (pdf)

M. Kersten-Oertel, I. Gerard, S. Drouin, K. Mok, D. Sirhan, D. Sinclair and D.L. Collins, “Augmented reality in neurovascular surgery: feasibility and first uses in the operating room”, Int. J computer Assisted Radiolgy and Surgery. 2015 Nov; 10(11):1823–36. (pdf)

B.S. Khundrakpam, J. Tohka, A.C. Evans, Brain Development Cooperative Group, “Prediction of brain maturity based on cortical thickness at different spatial resolutions”, Neuroimage. 2015 May 1; 111:350–9 (pdf)

B. H. Menze, A. Jakab, S. Bauer, J. Kalpathy-Cramer, K. Farahani, J. Kirby, Y. Burren, N. Porz, J. Slotboom, R. Wiest, L. Lanczi, E. Gerstner, M. Weber, T. Arbel, B. B. Avants, N. Ayache, P. Buendia, D. L. Collins, … K. Van Leemput “The multimodal brain tumor image segmentation benchmark (BRATS)”, IEEE Trans Med Imaging. 2015 Oct; 34(10): 1993–2024. (pdf)

Nakamura K, Brown RA, Narayanan S, Collins DL, Arnold DL, “Diurnal fluctuations in brain volume: Statistical analyses of MRI from large populations”, Neuroimag. 2015 September; 118:126–132 (pdf)

Nitzsche B, Frey S, Collins DL, Seeger J, Lobsien D, Dreyer A, Kirsten H, Stoffel MH, Fonov VS, Boltze, J, “A stereotaxic, population-averaged T1w ovine brain atlas including cerebral morphology and tissue volumes”, Front Neuroanatomy. 2015 Jun; 9:69 (pdf)

M. Pruessner, M. Lepage, D.L. Collins, J.C. Pruessner, R. Joober and A.K. Malla, “Reduced hippocampal volume and hypothalamus-pituitary-adrenal axis function in first episode psychosis: Evidence for sex differences”, NeuroImage: Clinical. 2015; 7: 195–202. (pdf)

J.R. Pruett, Jr., S. Kandala, S. Hoertel, A.Z. Snyder, J.T. Elison, T. Nishino, E. Feczko, N.U.F. Dosenbach, B. Nardos, J.D. Power, B. Adeyemo, K.N. Botteron, R.C. McKinstry, A.C. Evans, H.C. Hazlett, S.R. Dager, S. Paterson, R.T. Schultz, D.L. Collins, V.S. Fonov, M. Styner, G. Gerig, S. Da, P. Kostopoulos, J.N. Constantino, A.M. Estes, The IBIS Network, S.E. Petersen, B.L. Schlaggar, and J. Piven, “Accurate age classification of 6 and 12 month-old infants based on resting-state functional connectivity magnetic resonance imaging data”, Development & Cognitive Neuroscience. 2015 April; 12: 123–133.(pdf)

H. Rivaz, S.J.S Chen, D.L. Collins, “Automatic Deformable MR-Ultrasound Registration for Image-Guided Neurosurgery”, IEEE Transactions on Medical imaging. 2015 February; 34(2): 366–380 (pdf)

H. Rivaz, D.L. Collins, “Near real-time robust non-rigid registration of volumetric ultrasound images for neurosurgery”, Ultrasound in Medecine and Biology. 2015 Feb; 41(2): 574–587. (pdf)

H. Rivaz, D.L. Collins, “Deformable Registration of Pre-Operative MR, Pre-Resection Ultrasound and Post- Resection Ultrasound: Comparing Three Approaches”, International Journal of Computer Assisted Radiology and Surgery. 2015 July; 10(7): 1017–1028. (pdf)

J. Seuntjens, L. Beaulieu, D.L. Collins, P. Despres, S. Devic, I. El Naqa, J. Nadeau, B. Pike A. Reader. (2015). The CREATE Medical Physics Research Training Network: Training of New Generation Innovators.Med Phys. 42(6): 3557.

Weier K, Fonov V, Aubert-Broche B, Arnold DL, Banwell B, Collins DL. “Impaired growth of the cerebellum in pediatric-onset acquired CNS demyelinating disease”, Multiple Sclerosis. 2015 Nov 9 [Epub ahead of print] (pdf)

K. Weier, C. Till, V. Fonov, E.A. Yeh, D.L. Arnold, B. Banwell, D.L. Collins. “Contribution of the cerebellum to cognitive performance in children and adolescents with multiple sclerosis.”, Multiple Sclerosis Journal, 2015 July 22; [Epub ahead of print] (pdf)

K. Weier, B. Banwell, A. Cerasa, D.L. Collins, A. Dogonowski, H. Lassmann, A. Quattrone, M.A. Sahraian, H.R. Siebner and T. Sprenger, “The role of the cerebellum in multiple sclerosis”, Cerebellum. 2015 June; 14(3): 364–74. (pdf)

Y. Xiao, V.S. Fonov, S. Beriault, F. Al Soubaie, M.M. Chakravarty, A.F. Sadikot, G.B. Pike and D.L. Collins, “Multi-contrast unbiased MRI atlas of a Parkinson’s disease population”, Int J Comput Assist Radiol Surg. 2015 March; 10: 329–341 (pdf)

Xiao Y, Fonov VS, Beriault S, Gerard I, Sadikot AF, Pike GB, Collins DL. Patch-based label fusion segmentation of brainstem structures with dual-contrast MRI for Parkinson’s disease. Int J Comput Assist Radiol Surg. 2015 July; 10: 1029–1041. (pdf)

Zelmann, R., S. Beriault, M. M. Marinho, K. Mok, J. A. Hall, N. Guizard, C. Haegelen, A. Olivier, G. B. Pike, and D. L. Collins. “Improving recorded volume in mesial temporal lobe by optimizing stereotactic intracranial electrode implantation planning.” International journal of computer assisted radiology and surgery. 2015 Oct; 10(10): 1599–615. (pdf)

 Zeighami, Y., Ulla, M., Iturria-Medina, Y., Dadar, M., Zhang, Y., Larcher K.M., Fonov, V., Evans, A.C., Collins, D.L., Dagher, A. “Network structure of brain atrophy in de novo Parkinson’s Disease”, Elife, 2015 September 7; 4: e08440 (pdf)

2014

Manjón, J. V., Eskildsen, S. F., Coupé, P., Romero, J. E., Collins, DL, & Robles, M. Nonlocal Intracranial Cavity Extraction. International Journal of Biomedical Imaging. 2014; 10. (pdf)

B. Broche, V Fonov, S Narayanan, DL Arnold, D Araujo, D Fetco, C Till, JG Sled, B Banwell, DL Collins, “Onset of multiple sclerosis before adulthood leads to failure of age-expected brain growth” Neurology. 2014 Dec 2; 83(23);2140–6. (pdf)

Weier K, Fonov V, Lavoie K, Doyon J, Collins DL. Rapid automatic segmentation of the human cerebellum and its lobules (RASCAL)-Implementation and application of the patch-based label-fusion technique with a template library to segment the human cerebellum. Hum Brain Mapp. 2014 Oct;35(10):5026–39 (pdf)

Y. Xiao, P. Jannin, T. D’Albis, N. Guizard, C. Haegelen, L. Florent, D.L. Collins, “Investigation of morphometric variability of subthalamic nucleus, red nucleus and substantia nigra in advanced Parkinson’s disease patients using automatic segmentation and PCA-based analysis”, Human Brain Mapping, 2014 Sep;35(9):4330–44 (pdf)

Belleville, S., Fouquet, C., Duchesne, S., Collins, D. L., & Hudon, C. Detecting Early Preclinical Alzheimer’s Disease via Cognition, Neuropsychiatry, and Neuroimaging: Qualitative Review and Recommendations for Testing.Journal of Alzheimer’s Disease. 2014 September; 42: 1387–2877 (pdf)

Fonov VS, Le Troter A, Taso M, De Leener B, Lévêque G, Benhamou M, Sdika M, Benali H, Pradat PF, Collins DL, Callot V, Cohen-Adad J. Framework for integrated MRI average of the spinal cord white and gray matter: The MNI-Poly-AMU template. Neuroimage. 2014 Sep 7;102P2:817–827. (pdf)

Tomaiuolo F, Campana S, Collins DL, Fonov VS, Ricciardi E, Sartori G, Pietrini P, Kupers R, Ptito M. Morphometric changes of the corpus callosum in congenital blindness. PLoS One. 2014 Sep 25;9(9):e107871 (pdf)

S. Beriault, A. Sadikot, F. Alsubaie, S. Drouin, D.L. Collins, G.B. Pike. “Neuronavigation using susceptibility-weighted venography: application to deep brain stimulation and comparison with gadolinium contrast”, Journal of Neurosurgery. 2014 Jul;121(1):131–41. (pdf)

M. Derakhshan, Z. Caramanos, S. Narayanan, D. L. Arnold and D.L. Collins, “Surface-based analysis reveals regions of cortical magnetization transfer ratio in patients with multiple sclerosis: a proposed method for imaging subpial demyelination”, Human Brain Mapping. 2014 Jul;35(7):3402–13. (pdf)

Karama S, Bastin ME, Murray C, Royle NA, Penke L, Muñoz Maniega S, Gow AJ, Corley J, Valdés Hernández Mdel C, Lewis JD, Rousseau MÉ, Lepage C, Fonov V, Collins DL, Booth T, Rioux P, Sherif T, Adalat R, Starr JM, Evans AC, Wardlaw JM, Deary IJ. Childhood cognitive ability accounts for associations between cognitive ability and brain cortical thickness in old age. Mol Psychiatry. 2014 May;19(5):555–9. (pdf)

Lewis JD, Evans AC, Pruett JR, Botteron K, Zwaigenbaum L, Estes A, Gerig G, Collins DL, Kostopoulos P, McKinstry R, Dager S, Paterson S, Schultz RT, Styner M, Hazlett H, Piven J. Network inefficiencies in autism spectrum disorder at 24 months. Transl Psychiatry. 2014 May 6;4:e388. (pdf)

H. Rivas, Z. Karimaghaloo, D.L. Collins, “Nonrigid Registration of Ultrasound and MRI Using Contextual Conditioned Mutual Information”, IEEE Trans Med Imag. 2014 Mar;33(3):708–25 (pdf)

Kersten-Oertel M, Chen SJ, Collins DL. An evaluation of depth enhancing perceptual cues for vascular volume visualization in neurosurgery. IEEE Trans Vis Comput Graph. 2014 Mar;20(3):391–403. (pdf)

MacDonald PA, Ganjavi H, Collins DL, Evans AC, Karama S. Investigating the relation between striatal volume and IQ. Brain Imaging Behav. 2014 Mar;8(1):52–9. (pdf)

Hu S, Coupé P, Pruessner JC, Collins DL. Nonlocal regularization for active appearance model: Application to medial temporal lobe segmentation. Hum Brain Mapp. 2014 Feb;35(2):377–95. (pdf)

H Rivaz, Z Karimaghaloo, DL Collins, “Self-Similarity Weighted Mutual Information: A New Nonrigid Image Registration Metric”, Medical Image Analysis. 2014 Feb;18(2):343–58 (pdf)

S H. Ameis, S Ducharme, M D. Albaugh, J J. Hudziak, K N. Botteron, C Lepage, L Zhao, B Khundrakpam, D. L Collins, J P. Lerch, A Wheeler, R Schachar, A C. Evans and S Karama, “Cortical thickness, cortico-amygdalar networks, and externalizing behaviors in healthy children”, Biological Psychiatry. 2014 Jan 1;75(1):65–72. (pdf)

2013

M. Albaugh, S. Ducharme, D. L. Collins, K. Botteron, R. Althoff, A. Evans, S. Karama, and J. Hudziak, “Evidence for a cerebral cortical thickness network anti-correlated with amygdalar volume in healthy youths: implications for the neural substrates of emotion regulation”, Neuroimage. 2013 May 1;71:42–9 (pdf)

J. Ansado, D.L. Collins, S. Joubert, V.S. Fonov, O. Monchi, S.M. Brambati, F. Tomaiuolo, M. Petrides, S. Faure, Y. Joanette, Y. “Interhemispheric coupling improves the brain’s ability to perform low cognitive demand tasks in Alzheimer’s disease and high cognitive demand tasks in normal aging”, Neuropsychology, Vol 27(4), Jul 2013, 464–480 (pdf)

Aubert-Broche B, Fonov VS, García-Lorenzo D, Mouiha A, Guizard N, Coupé P, Eskildsen SF, Collins DL. “A new method for structural volume analysis of longitudinal brain MRI data and its application in studying the growth trajectories of anatomical brain structures in childhood. Neuroimage. 2013 May 26;82:393–402. (pdf)

M Boccardi, M Bocchetta, L G. Apostolova, G Preboske, N Robitaille, P Pasqualetti, D.L. Collins, S. Duchesne, C.R. Jack Jr, G. B. Frisoni, “Establishing Magnetic Resonance Images Orientation for the EADC-ADNI Manual Hippocampal Segmentation Protocol”, Journal of Neuroimaging 2013 Nov 26 (pdf)

M. M. Chakravarty, P. Steadman, M. C. van Eede, R. D. Calcott, V. Gu, P. Shaw, A. Raznahan, D. L. Collins, and J. P. Lerch. Performing label-fusion based segmentation using multiple automatically generated templates. Human Brain Mapping. 2013 Oct;34(10):2635–54 (pdf)

D. De Nigris, D. L. Collins, T. Arbel, “Fast Rigid Registration of Pre-Operative Magnetic Resonance Images to Intra-Operative Ultrasound for Neurosurgery based on High Confidence Gradient Orientations”, July 2013, Volume 8, Issue 4, pp 649–661 (pdf)

C. Elliot, D.L. Collins, D. L. Arnold, T. Arbel,”Temporally Consistent Probabilistic Segmentation of New Multiple Sclerosis Lesions in Brain MRI”, IEEE Transactions on medical imaging 2013 Apr 16. [Epub ahead of print] (pdf)

SF Eskildsen, P Coupé, D García-Lorenzo, V Fonov, JC Pruessner, DL Collins; Prediction of Alzheimer’s disease in subjects with mild cognitive impairment from the ADNI cohort using patterns of cortical thinning. Neuroimage. 2013 Jan 15;65:511–21. (pdf)

G Forestier, F Lalys, DL Collins, J. Meixensberger, S Wassef, T Neumuth, B Goulet, L Riffaud, P Jannin. Multi-site study of surgical practice in neurosurgery based on Surgical Process Models, Journal of Biomedical Informatics. 2013 October; 46(5):822–829 (pdf)

D. García-Lorenzo, S. Francis, S. Narayanan, D. L. Arnold and D. L. Collins. “Review of automatic segmentation methods of multiple sclerosis white matter lesions on conventional magnetic resonance imaging”, Medical Image analysis, 2013 Jan;17(1):1–18 (pdf)

C. Haegelen, P. Coupé, V. Fonov, N. Guizard, P. Jannin, X. Morandi and D. L. Collins. “Automated segmentation of basal ganglia and deep brain structures on MRI of patients with Parkinson’s disease”, International Journal of Computer Assisted Radiology and Surgery, 2013 Jan;8(1):99–110 (pdf)

C. Haegelen, P. Perucca, C.-E. Châtillon, L. Andrade-Valença, R. Zelmann, J. Jacobs, D. L. Collins, F. Dubeau, A. Olivier and J. Gotman. “High-frequency oscillations, extent of surgical resection and surgical outcome in drug-resistant focal epilepsy”, Epilepsia 2013 May;54(5):848–57 (pdf)

Hu S, Pruessner JC, Coupé P, Collins DL. Volumetric analysis of medial temporal lobe structures in brain development from childhood to adolescence. Neuroimage. 2013 Jul 1;74:276–87 (pdf)

M. Kersten-Oertel, P. Jannin, D.L. Collins, “The State of the Art in Mixed Reality Visualization in Image-Guided Surgery”, IEEE Transactions on Visualization and Computer Graphics. 2013 Mar;37(2):98–112 (pdf)

Kim, S. H., V. S. Fonov, C. Dietrich, C. Vachet, H. C. Hazlett, R. G. Smith, M. M. Graves, J. Piven, J. H. Gilmore, S. R. Dager, R. C. McKinstry, S. Paterson, A. C. Evans, D. L. Collins, G. Gerig, M. A. Styner and I. network (2013). “Adaptive prior probability and spatial temporal intensity change estimation for segmentation of the one-year-old human brain.” J Neurosci Methods 212(1): 43–55 (pdf)

J.V. Manjon, P. Coupe, L. Concha, A. Buades, D.L. Collins, M. Robles. “Diffusion Weighted Image Denoising using overcomplete Local PCA”, PLoS One, 2013, Sep 3; 8(9); e73021. doi: 10.1371/journal.pone.0073021 (pdf)

L. Mercier, D Araujo, C Haegelen, RF Del Maestro, K Petrecca, DL Collins, “Registering pre- and post-resection 3D ultrasound for improved residual brain tumor localization”, Ultrasound in Medicine and Biology, 2013 Jan;39(1):16–29. (pdf)

K. Nakamura, N.Guizard, V.S. Fonov, S. Narayanan, D.L. Collins, D.L. Arnold, “Jacobian integration method increases the statistical power to Measure gray matter atrophy in multiple sclerosis”, NeuroImage:Clinical, 2013 Oct 29;4:10–7 (pdf)

Till C, Racine N, Araujo D, Narayanan S, Collins DL, Aubert-Broche B, Arnold DL, Banwell B. “Changes in cognitive performance over a 1-year period in children and adolescents with multiple sclerosis”. Neuropsychology. 2013 Mar;27(2):210–9 (pdf)

J. Ansado, D. L. Collins, V. Fonov, M. Garon, L. Alexandrov, S. Karama, A.C. Evans, M. Beauchamp, and the Brain Development Cooperative Group. “A new template to study callosal growth reveals an early intense period of maturation in childhood”, submitted to Journal NeuroScience June 25, 2013 (JN-RM-2691–13).

2012

Bériault S, Subaie FA, Collins DL, Sadikot AF, Pike GB.,A multi-modal approach to computer-assisted deep brain stimulation trajectory planning., Int J Comput Assist Radiol Surg. 2012 Sep;7(5):687–704 (pdf)

M. M. Chakravarty, P. Steadman, M. C. van Eede, R. D. Calcott, V. Gu, P Shaw, A. Raznahan, D. L. Collins, J. P. Lerch. “Performing label-fusion-based segmentation using multiple automatically generated templates”, Hum. Brain Mapp. 2012 doi: 10.1002/hbm.22092 (pdf)

Chen SJ, Reinertsen I, Coupé P, Yan CX, Mercier L, Del Maestro DR, Collins DL., Validation of a hybrid Doppler ultrasound vessel-based registration algorithm for neurosurgery. Int J Comput Assist Radiol Surg. 2012 Sep;7(5):667–85 (pdf)

Chen SJ, Hellier P, Marchal M, Gauvrit JY, Carpentier R, Morandi X, Collins DL. An anthropomorphic polyvinyl alcohol brain phantom based on Colin27 for use in multimodal imaging. Med Phys. 2012 Jan;39(1):554–61 (pdf)

Coupé P, Munz M, Manjon JV, Ruthazer ES, Collins DL. A CANDLE for a deeper in vivo insight. Med Image Anal. 2012 May;16(4):849–64 (pdf)

Coupé P, Eskildsen SF, Manjon JV, Fonov VS, Collins DL; Alzheimer’s disease Neuroimaging Initiative. Simultaneous segmentation and grading of anatomical structures for patient’s classification: application to Alzheimer’s disease. Neuroimage. 2012 Feb 15;59(4):3736–47 (pdf)

P. Coupé, J.V. Manjón, M. Robles and D. L. Collins, “Adaptive Multiresolution Non-Local Means Filter for 3D MR Image Denoising,” IET Image Processing, 6(5): 558–568, 2012. (pdf)

P. Coupé, A. Buades, D. Louis Collins and M. Robles, “New Methods for MRI Denoising based on Sparseness and Self-Similarity,” Medical Image Analysis, 2012 Jan;16(1):18–27 (pdf)

P Coupé, SF Eskildsen, JV Manjon, VS Fonov, JC Pruessner, M Allard, DL Collins, “Scoring by Nonlocal Image Patch Estimator for Early Detection of Alzheimer’s Disease”, NeuroImage: Clinical, Volume 1, Issue 1, 2012, Pages 141–152 (pdf)

D. DeNigris, DL Collins, T Arbel, “ Multi-Modal Image Registration based on Gradient Orientations of Minimal Uncertainty”, IEEE Transactions on Medical Imaging, 31(12):2343–2354 (pdf)

Eskildsen SF, Coupé, P, Fonov V, Manjon JV, Leung KK, Guizard N, Wassef SN, Ostergaard LR, Collins DL; BEaST: brain extraction based on nonlocal segmentation technique. Alzheimer’s Disease Neuroimaging Initiative. Neuroimage. 2012 Feb 1;59(3):2362–73 (pdf)

Evans AC, Janke AL, Collins DL, Baillet S., Brain templates and atlases. Neuroimage. 2012 Aug 15;62(2):911–22 (pdf)

Kerbrat A, Aubert-Broche B, Fonov V, Narayanan S, Sled JG, Arnold DA, Banwell B, Collins DL. Reduced head and brain size for age and disproportionately smaller thalami in child-onset MS. Neurology. 2012 Jan 17;78(3):194–201 (pdf)

Kersten-Oertel M, Chen SS, Drouin S, Sinclair DS, Collins DL. Augmented reality visualization for guidance in neurovascular surgery. Stud Health Technol Inform. 2012;173:225–9 (pdf)

Fuentes A, Collins DL, Garcia-Lorenzo D, Sled JG, Narayanan S, Arnold DL, Banwell BL, Till C. Memory performance and normalized regional brain volumes in patients with pediatric-onset multiple sclerosis. J Int Neuropsychol Soc. 2012 May;18(3):471–80. (pdf)

Haegelen C, Coupé, P, Fonov V, Guizard N, Jannin P, Morandi X, Collins DL. Automated segmentation of basal ganglia and deep brain structures in MRI of Parkinson’s disease. Int J Comput Assist Radiol Surg. 2012 Mar 18 (pdf)

S Hu, P Coupé, JC Pruessner, DL Collins, Nonlocal Regularization for Active Appearance Model: Application to Medial Temporal Lobe Segmentation, Human Brain Mapping, epub Sept 15, 2012 (pdf)

Hulshoff Pol HE, van Baal GC, Schnack HG, Brans RG, van der Schot AC, Brouwer RM, van Haren NE, Lepage C, Collins DL, Evans AC, Boomsma DI, Nolen W, Kahn RS. Overlapping and segregating structural brain abnormalities in twins with schizophrenia or bipolar disorder. Arch Gen Psychiatry. 2012 Apr;69(4):349–59 (pdf)

Karimaghaloo Z, Shah M, Francis SJ, Arnold DL, Collins DL, Arbel T. Automatic detection of gadolinium-enhancing multiple sclerosis lesions in brain MRI using conditional random fields. IEEE Trans Med Imaging. 2012 Jun;31(6):1181–94 (pdf)

Kersten-Oertel M, Jannin P, Collins DL. DVV: a taxonomy for mixed reality visualization in image guided surgery. IEEE Trans Vis Comput Graph. 2012 Feb;18(2):332–52 (pdf)

Mercier L, Fonov V, Haegelen C, Del Maestro RF, Petrecca K, Collins DL. Comparing two approaches to rigid registration of three-dimensional ultrasound and magnetic resonance images for neurosurgery. Int J Comput Assist Radiol Surg. 2012 Jan;7(1):125–36 (pdf)

Mercier L, Del Maestro RF, Petrecca K, Araujo D, Haegelen C, Collins DL. Online database of clinical MR and ultrasound images of brain tumors. Med Phys. 2012 Jun;39(6):3253–61 (pdf)

I. van Soelen, R. Brouwer, C. van Baal, H. Schnack, J. Peper, D.L. Collins, A. Evans, R. Kahn, D. Boomsma and H. Hulshoff Pol, “Genetic influences on thinning of the cerebral cortex during development”, NeuroImage, 15 February, 2012. 59(4):3871–80. (pdf)

Sprenger T, Seifert CL, Valet M, Andreou AP, Foerschler A, Zimmer C, Collins DL, Goadsby PJ, Tölle TR, Chakravarty MM , Assessing the risk of central post-stroke pain of thalamic origin by lesion mapping. Brain. 2012 Aug;135(Pt 8):2536–45 (winner of the Sertuerner Award 2013) (pdf)

C.L. Tardif, B.J. Bedell, S.F. Eskildsen, DL Collins and G. B. Pike; “Quantitative magnetic resonance imaging of cortical multiple sclerosis pathology,” Multiple Sclerosis International 2012;2012:742018 (pdf)

Till C, Ho C, Dudani A, Garcia-Lorenzo D, Collins DL, Banwell BL, Magnetic resonance imaging predictors of executive functioning in patients with pediatric-onset multiple sclerosis. Arch Clin Neuropsychol. 2012 Aug;27(5):495–509 (pdf)

Xiao Y, Beriault S, Pike GB, Collins DL. Multicontrast multiecho FLASH MRI for targeting the subthalamic nucleus. Magn Reson Imaging. 2012 Jun;30(5):627–40 (pdf)

Yan CX, Goulet B, Chen SJ, Tampieri D, Collins DL. Validation of automated ultrasound-CT registration of vertebrae. Int J Comput Assist Radiol Surg. 2012 Jul;7(4):601–10 (pdf)

Yan CX, Goulet B, Tampieri D, Collins DL. Ultrasound-CT registration of vertebrae without reconstruction. Int J Comput Assist Radiol Surg. 2012 Jun 15 (pdf)

2011

B. Aubert-Broche, V. Fonov, R. Ghassemi, S. Narayanan, D. Arnold, B. Banwell, JG Sled and D.L. Collins, “Regional brain atrophy in children with multiple sclerosis,” NeuroImage, 2011 Sep 15;58(2):409–15. (pdf)

P. Coupé, J.V. Manjón, V. Fonov, J. Pruessner, M. Robles and D.L. Collins, “Patch-based Segmentation using Expert Priors: Application to Hippocampus and Ventricle Segmentation,” NeuroImage, 54(2):940–954, 2011. (pdf)

S. Ducharme, J.J. Hudziak, K.N. Botteron, H. Ganjavi, C. Lepage, D.L. Collins, M. Albaugh, A.C. Evans, S. Karama and the Brain Development Cooperative Group. “Right Anterior Cingulate Cortical Thickness and Bilateral Striatal Volume Correlate with CBCL Aggressive Behavior Scores in Healthy Children”, Biological Psychiatry, 2011 Aug 1;70(3):283–90. (pdf)

Fonov V, Evans AC, Botteron K, Almli CR, McKinstry RC, Collins DL; Brain Development Cooperative Group.Unbiased average age-appropriate atlases for pediatric studies. Neuroimage. 2011 Jan 1;54(1):313–27 (pdf)

S. Frey, D.N. Pandya, M.M. Chakravarty, L. Bailey, M. Petrides and D.L. Collins, “An MRI based average macaque monkey stereotaxic atlas and space (MNI monkey space),” NeuroImage, 2011 Apr 15;55(4):1435–42. (pdf)

Garcia-Lorenzo D, Prima S, Arnold DL, Collins DL, Barillot C. Trimmed-likelihood estimation for focal lesions and tissue segmentation in multisequence MRI for multiple sclerosis. IEEE Trans Med Imaging. 2011 Aug;30(8):1455–67 (pdf)

S. Hu, P. Coupé, J. Pruessner and D.L. Collins, “Appearance-based Modeling for Segmentation of Hippocampus and Amygdala using Multi-contrast MR Imaging”, accepted for publication, NeuroImage, 2011 Sep 15;58(2):549–59 (pdf)

M. Kersten-Oertel, P. Jannin and D.L. Collins, “DVV: A Taxonomy for Mixed Reality visualization in Image Guided Surgery”, Transactions on Visualization and Computer Graphics, 2011 Mar 2. (pdf)

L. Mercier, R.F. Del Maestro, K. Petrecca, A. Kochanowska, S. Drouin C.X.B. Yan, A.L. Janke, S. J.S. Chen and D.L. Collins, “New prototype neuronavigation system based on preoperative imaging and intraoperative freehand ultrasound: System description and validation,” International Journal of Computer Assisted Radiology and Surgery, 2011 Jul;6(4):507–22. (pdf)

L. Mercier, V. Fonov, C. Haegelen, R. Del Maestro, K. Petrecca and D.L. Collins, “Comparing two approaches to rigid registration of three-dimensional ultrasound and magnetic resonance images for neurosurgery”, International Journal of Computer Assisted Radiology and Surgery, 2011 Jun 2. [Epub ahead of print]. (pdf)

K. Murphy, B. van Ginneken, J.M. Reinhardt, S. Kabus, K. Ding, X Deng, K. Cao, K. Du, G.E. Christensen, V. Garcia, T. Vercauteren, N. Ayache, O. Commowick, G. Malandain, B. Glocker, N. Paragios, N. Navab, V. Gorbunova, J. Sporring, M. de Bruijne, X. Han, M.P. Heinrich, J.A. Schnabel, M. Jenkinson, C. Lorenz, M. Modat, J.R. McClelland, S. Ourselin, S.E.A. Muenzing, M.A. Viergever, D. De Nigris, D. Louis Collins, T. Arbel, M. Peroni, R.Li, G.C. Sharp, A. Schmidt-Richberg, J. Ehrhardt, R. Werner, D. Smeets, D. Loeckx, G. Song, N. Tustison, B. Avants, J.C. Gee, M. Staring, S. Klein, B.C. Stoel, M. Urschler, M. Werlberger, J. Vandemeulebroucke, S. Rit, D. Sarrut and J.P.W. Pluim, “Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge”, IEEE Transactions on Medical Imaging, 2011 May 31. 30(11):1901–1920 (pdf)

M. Rais, N.E.M. van Haren, W Cahn, H.G. Schnack, C. Lepage, D.L. Collins, A. Evans, H. E. Hulshoff Poll and R.S. Kahn, “Cannabis use and progressive cortical thickness loss in areas rich in CB1 receptors during the first five years of schizophrenia,” European Neuropsychopharmacology, 2010 Dec;20(12):855–65. (pdf)

A. F. Sadikot, *M. M. Chakravarty, G. Bertrand, V. V Rymar, F. Al-Subaie and D. L. Collins. “Creation of computerized 3D MRI-integrated atlases of the human basal ganglia and thalamus”, Frontiers in Systems Neuroscience, 2011;5:71 (pdf)

H.G. Schnack, N.E.M. van haren, R.M. Brouwer, G.C.M. van Baall, M. Picchioni, M. Weisbrod, H. Sauer, T. Cannon, M. Huttunen, C. Lepage, D. L. Collins, A. Evans, R. Murray, R.S. Kahn, H.E. Hulshoff Pol, “Mapping Reliability in Multicenter MRI: Voxel-based Morphometry and Cortical Thickness,” in Human Brain Mapping, 2010 Dec;31(12):1967–82. (pdf)

M. Shah, Y. Xiao, S. Francis, D. Arnold, D.L. Collins and T. Arbel, “Evaluating Intensity Normalization on MRIs of Human Brain with Multiple Sclerosis,” Medical Imaging Analysis, 2011 Apr;15(2):267–82. (pdf)

C. Till, R. Ghassemi, *B. Aubert-Broche, *A. Kerbrat, D.L. Collins, S. Narayanan, D.L. Arnold, M. Desrocher, J.G. Sled and B.L. Banwell, “MRI correlates of cognitive impairment in childhood onset multiple sclerosis”, Neuropsychology, 2011 May;25(3):319–32. (pdf)

C.X.B. Yan, B. Goulet, J. Pelletier, S.J.S. Chen, D. Tampieri and D.L. Collins, “Towards Accurate, Robust and Practical Ultrasound-CT Registration of Vertebrae for Image-Guided Spine Surgery,” International Journal of Computer Assisted Radiology and Surgery, 2011 Jul;6(4):523–37. (pdf)

2010

P. Hellier, P. Coupé, X Morandi and D.L. Collins, “An automatic geometrical and statistical method to detect acoustic shadows in intraoperative ultrasound brain images”, Medical Image Analysis, 14(2010) 195–204, February 2010. (pdf)

†C. Tardif, D.L. Collins and G.B. Pike, “Regional impact of field strength on voxel-based morphometry results”, Human Brain Mapping, HBM-09–0187.R2, 31:943–957, July 2010. (pdf)

M. Toews, W. Wells III, D. L. Collins, T. Arbel, “Feature-Based Morphometry: Discovering Group-related Anatomical Patterns,” NeuroImage, NIMG-09–643R1, accepted, October 10, 2009. (pdf)

R. Brans, R.S. Kahn, H. Schnac, G.C. van Baal, D. Posthuma, N. van Haren, C. LePage, J. Lerch, D.L. Collins, A. Evans D. Boomsma and H. Hulshoff Pol, “Brain plasticity and intellectual ability are influenced by common genes,” accepted, Journal of Neuroscience, February 8, 2010.(pdf)

H.G. Schnackl, N.E.M. van haren, R.M. Brouwer, G.C.M. van Baall, M. Picchioni, M. Weisbrod, H. Sauer, T. Cannon, M. Huttunen, C. Lepage, D. L. Collins, A. Evans, R. Murray, R.S. Kahn, H.E. Hulshoff Pol, “Mapping Reliability in Multicenter MRI: Voxel-based Morphometry and Cortical Thickness,” accepted in Human Brain Mapping, February 2010.(pdf)

S.J. Kish, J. Lerch, Y. Furukawa, J. tong, T. McCluskey, D. Wilkins, S. Houle, J. Meyer, E. Mundo, A.A. Wilson, P.M. Rusjan, J. Saint-Cyr, M. Guttman, D.L. Collins, C. Shapiro, J.J. Warsh and I. Boileau, “Decreased Cerebral Cortical Serotonin Transporter Binding in Ecstasy Users: A PET[11C]DASB and Structural Brain Imaging Study”, accepted by Brain, April 1, 2010.
(pdf)

D.L. Collins and J.C. Preussner, “Towards accurate, automatic segmentation of the hippocampus and amygdala from MRI by augmenting ANIMAL with a template library and label fusion”, accepted by NeuroImage (NIMG-09–1351), April 18, 2010.(pdf)

M. Derakhshan; Z. Caramanos, P.S. Giacomini, S. Narayanan, J. Maranzano, S.J. Francis, D.L. Arnold and D.L. Collins, “Evaluation of Automated Techniques for the Quantification of Grey Matter Atrophy in Patients with Multiple Sclerosis,” accepted by NeuroImage, May 2010.
(pdf)

J.V. Manjón, P. Coupé, A. Buades, V. Fonov, D.L. Collins and M. Robles, “Non-Local MRI Upsampling”, in press, Medical Image Analysis, May 2010.(pdf)

J.V.Manjón Herrera, P. Coupé, L.M. Bonmati, D.L. Collins, and M. Robles, “Adaptive Non-Local Means Denoising of MR Images with Spatially Varying Noise Levels,” J Mag Res Imag., Vol. 31, Issue 1, pages 192–203.(pdf)

Z. Caramanos, *V. Fonov, S.J. Francis, S. Narayanan, G.B. Pike, D.L. Collins, and D.L. Arnold, “Gradient Distortions in MRI: Characterizing and Correcting For Their Effects on SIENA-Generated Measures of Brain Volume Change,” NeuroImage, 49(2), 1601–1611. (Corrigendum: NeuroImage, 49, 3498), January 2010.(pdf)

P. Hellier, P. Coupé, X Morandi and D.L. Collins, “An automatic geometrical and statistical method to detect acoustic shadows in intraoperative ultrasound brain images”, Medical Image Analysis, 14(2010) 195–204, February 2010.(pdf)

C. Tardif, D.L. Collins and G.B. Pike, “Regional impact of field strength on voxel-based morphometry results”, Human Brain Mapping, HBM-09–0187.R2, May 2010.(pdf)

P. Coupé, J.V. Manjon, E. Gedamu, D.L. Arnold, M. Robles, and D.L. Collins, “Robust Rician Noise Estimation for MR Images”, Medical Image Analysis 14 (2010)483–493.(pdf)

M. Rais, N.E.M. van Haren, W Cahn, H.G. Schnack, C. Lepage, D.L. Collins, A. Evans, H. E. Hulshoff Poll and R.S. Kahn, “Cannabis use and progressive cortical thickness loss in areas rich in CB1 receptors during the first five years of schizophrenia,” accepted by European Neuropsychopharmacology, August 2010.

C. Till, R. Ghassemi, B. Aubert-Broche, A. Kerbrat, D.L. Collins, S. Narayanan, D.L. Arnold, M. Desrocher, J.G. Sled and B.L. Banwell, “MRI correlates of cognitive impairment in childhood onset multiple sclerosis”, accepted by Neuropsychology, September 2010. (pdf)

L. Mercier, R.F. Del Maestro, K. Petrecca, A. Kochanowska, S. Drouin C.X.B. Yan, A.L. Janke, S. J.S. Chen and D.L. Collins, “New prototype neuronavigation system based on preoperative imaging and intraoperative freehand ultrasound: system description and validation,” accepted by International Journal of Computer Assisted Radiology and Surgery, September 13, 2010.(pdf)

C.X.B. Yan, B. Goulet, J. Pelletier, S.J.S. Chen, D. Tampieri and D.L. Collins, “Towards Accurate, Robust and Practical Ultrasound-CT Registration of Vertebrae for Image-Guided Spine Surgery,” accepted by the International Journal of Computer Assisted Radiology and Surgery, October 7, 2010 (pdf)

M. Shah, Y. Xiao, S. Francis, D. Arnold, D.L. Collins and T. Arbel, “Evaluating Intensity Normalization on MRIs of Human Brain with Multiple Sclerosis,” accepted by Medical Imaging Analysis, December 13, 2010, MEDIA-D-09–00297

2009

Concha, C. Beaulieu, D.L. Collins, and D.W. Gross. “White-matter diffusion abnormalities in temporal-lobe epilepsy with and without mesial temporal sclerosis,” J Neurol Neurosurg Psychiatry 2009; 80: 312–9.(pdf)

C.L. Tardif, D.L. Collins, and G.B. Pike, “Sensitivity of voxel-based morphometry analysis to choice of imaging protocol at 3 T,” Neuroimage 2009; 44: 827–38.(pdf)

B. Aubert-Broche*, C. Grova, G.B. Pike, and D.L. Collins, “Clustering of atlas-defined cortical regions based on relaxation times and proton density,” Neuroimage 2009; 47(2):523–532
(pdf)

M.M. Chakravarty*, A.F. Sadikot, J. Germann, P. Hellier, G. Bertrand, and D.L. Collins, “Comparison of piece-wise linear, linear, and nonlinear atlas-to-patient warping techniques: Analysis of the labeling of subcortical nuclei for functional neurosurgical applications,” Hum Brain Mapp. 2009 Apr 22. [Epub ahead of print]
(pdf)

J. S. Peper, H. G. Schnack, R. M. Brouwer, G. C. Van Baal, E. Pjetri, E. Szekely, M. van Leeuwen, S. M. van den Berg, D. L. Collins, A. C. Evans, D. I. Boomsma, R. S. Kahn, and H. E. Hulshoff Pol, “Heritability of regional and global brain structure at the onset of puberty: a magnetic resonance imaging study in 9-year-old twin pairs,” Hum Brain Mapp, vol. 30, pp. 2184–96, Jul 2009.
(pdf)

G. Wang, *L. Mercier, D. L. Collins, and J. R. Cooperstock, “A comparative study of monoscopic and stereoscopic display for a probe-positioning task,” Stud Health Technol Inform, vol. 142, pp. 417–9, 2009.
(pdf)

S.Duchesne*, A. Caroli, C. Geroldi, D.L. Collins, and G. B. Frisoni, “Relating one-year cognitive change in mild cognitive impairment to baseline MRI features,” NeuroImage, 47(4):1363–70, 2009.
(pdf)

J.C. Pruessner, K. Dedovic, M. Pruessner, C. Lord, C. Buss, D.L. Collins, A. Dagher, S.J. Lupien, “Stress regulation in the central nervous system: Evidence from structural and functional neuroimaging studies in human populations,” Psychoneuroendocrinology, [e-pub ahead of print], April 10, 2009.
(pdf)

N. Costes, A. Dagher, K. Larcher, A.C. Evans, D.L. Collins, and A. Reilhac, “Motion correction of multi-frame PET data in neuroreceptor mapping: simulation based validation,” NeuroImage, 47(4):1496–505.
(pdf)

Z. Caramanos, *V. Fonov, S.J. Francis, S. Narayanan, G.B. Pike, D.L. Collins, and D.L. Arnold, “Gradient Distortions in MRI: Characterizing and Correcting For Their Effects on SIENA-Generated Measures of Brain Volume Change,” NeuroImage, 2009 Aug 12 [epub ahead of print].
(pdf)

A. Klein, J. Andersson, B.A. Ardekani, J. Ashburner , B. Avants, M.C. Chiang, G.E. Christensen, D.L. Collins, J. Gee, P. Hellier, J.H. Song, M. Jenkinson, C. Lepage, D. Rueckert, P. Thompson, T. Vercauteren, R.P. Woods, J.J. Mann, R.V. Parsey. “Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration.”, Neuroimage. 2009 Jul 1;46(3):786–802.
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M.M. Chakravarty*, S. Broadbent, P. Rosa-Neto, C.M. Lambert, D.L. Collins, “Design, construction, and validation of an MRI-compatible vibrotactile stimulator intended for clinical use.”, J Neurosci Methods. 2009 Jul 23. [Epub ahead of print]
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2008

C. Amiez**, P. Kostopoulos, A. S. Champod, D. L. Collins, J. Doyon, R. D. Maestro, and M. Petrides, “Preoperative functional magnetic resonance imaging assessment of higher-order cognitive function in patients undergoing surgery for brain tumors,” J Neurosurg, vol. 108, pp. 258–268, 2008.
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M. M. Chakravarty*, P. Rosa-Neto, S. Broadbent, A. C. Evans, and D. L. Collins, “Robust s1, s2, and thalamic activations in individual subjects with vibrotactile stimulation at 1.5 and 3.0t,” Hum Brain Mapp, 2008.
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M. M. Chakravarty*, A. F. Sadikot, J. Germann, G. Bertrand, and D. L. Collins, “Towards a validation of atlas warping techniques,” Med Image Anal, 12: 713–26, 2008.
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J. T. Chen*, D. L. Collins, H. L. Atkins, M. S. Freedman, and D. L. Arnold, “Magnetization transfer ratio evolution with demyelination and remyelination in multiple sclerosis lesions,” Ann Neurol, 2008. 1531–8249.
(pdf)

M. Descoteaux**, D. L. Collins, and K. Siddiqi, “A geometric flow for segmenting vasculature in proton-density weighted MRI,” Med Image Anal, vol. 12, no. 4, pp. 497–513, 2008. 1361–8423
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S. Duchesne*, A. Caroli, C. Geroldi, C. Barillot, G. B. Frisoni, and D. L. Collins, “MRI-based automated computer classification of probable AD versus normal controls,” IEEE Trans Med Imaging, vol. 27, no. 4, pp. 509–20, 2008.
(pdf)

S. Duchesne*, Bocti C, De Sousa K, Frisoni GB, Chertkow H, Collins DL. Amnestic MCI future clinical status prediction using baseline MRI features. Neurobiol Aging 2008.
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E. L. Gedamu*, D. L. Collins, and D. L. Arnold, “Automated quality control of brain MR images,” J Magn Reson Imaging, vol. 28, no. 2, pp. 308–19, 2008.

I. B. Kezele*, D. L. Arnold, and D. L. Collins, “Atrophy in white matter fiber tracts in multiple sclerosis is not dependent on tract length or local white matter lesions,” Mult Scler, vol. 14, no. 6, pp. 779–85, 2008.
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J. P. Lerch**, J. Pruessner, A. P. Zijdenbos, D. L. Collins, S. J. Teipel, H. Hampel, and A. C. Evans, “Automated cortical thickness measurements from mri can accurately separate Alzheimer’s patients from normal elderly controls,” Neurobiol Aging, vol. 29, no. 1, pp. 23–30, 2008.
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J. S. Peper, R. M. Brouwer, H. G. Schnack, G. C. van Baal, M. van Leeuwen, S. M. van den Berg, H. A. Delemarre-Van de Waal, A. L. Janke, D. L. Collins, A. C. Evans, D. I. Boomsma, R. S. Kahn, and H. E. Pol, “Cerebral white matter in early puberty is associated with luteinizing hormone concentrations,” Psychoneuroendocrinology, vol. 33, no. 7, pp. 909–15, 2008.
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O. G. Rousset, D. L. Collins, A. Rahmim, and D. F. Wong, “Design and implementation of an automated partial volume correction in pet: application to dopamine receptor quantification in the normal human striatum,” J Nucl Med, vol. 49, no. 7, pp. 1097–106, 2008.
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M. Serban**, E. Heath**, G. Stroian**, D. L. Collins, and J. Seuntjens, “A deformable phantom for 4d radiotherapy verification: design and image registration evaluation,” Med Phys, vol. 35, no. 3, pp. 1094–102, 2008.
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G. Stroian**, C. Martens, L. Souhami, D. L. Collins, and J. Seuntjens, “Local correlation between Monte-Carlo dose and radiation-induced fibrosis in lung cancer patients,” Int J Radiat Oncol Biol Phys, vol. 70, no. 3, pp. 921–30, 2008.
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2007

J. T. Chen*, T. Kuhlmann, G. H. Jansen, D. L. Collins, H. L. Atkins, M. S. Freedman, P. W. O’Connor, and D. L. Arnold, Voxel-based analysis of the evolution of magnetization transfer ratio to quantify remyelination and demyelination with histopathological validation in a multiple sclerosis lesion, Neuroimage, vol. 36, no. 4, pp. 1152–8, 2007.
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E. Heath**, D. L. Collins, P. J. Keall, L. Dong, and J. Seuntjens, Quantification of accuracy of the automated nonlinear image matching and anatomical labeling (ANIMAL) nonlinear registration algorithm for 4d CT images of lung, Med Phys, vol. 34, no. 11, pp. 4409–21, 2007.
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S. Hu* and D. L. Collins, “Joint level-set shape modeling and appearance modeling for brain structure segmentation,” Neuroimage, vol. 36, pp. 672–83, 2007.
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I. B. Kezele*, J. T. Chen*, D. L. Arnold, and D. L. Collins, The relation of focal white matter signal abnormality and focal volume loss in multiple sclerosis, Multiple Sclerosis, vol. 13, no. 6, pp. 809–13, 2007.
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W. Li, I. Kezele*, D. L. Collins, A. Zijdenbos, J. Keyak, J. Kornak, A. Koyama, I. Saeed, A. Leblanc, T. Harris, Y. Lu, and T. Lang, “Voxel-based modeling and quantification of the proximal femur using inter-subject registration of quantitative CT images,” Bone, vol. 41, pp. 888–95, 2007.
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I. Reinertsen*, M. Descoteaux**, K. Siddiqi, and D. L. Collins, “Validation of vessel-based registration for correction of brain shift,” Med Image Anal, vol. 11, pp. 374–88, 2007.
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I. Reinertsen*, F. Lindseth, G. Unsgaard, and D. L. Collins, “Clinical validation of vessel-based registration for correction of brain-shift,” Med Image Anal, vol. 11, pp. 673–84, 2007.
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F. Tomaiuolo, M. Scapin, M. Di Paola, P. Le Nezet*, L. Fadda, M. Musicco, C. Caltagirone, D.L. Collins. Gross anatomy of the corpus callosum in Alzheimer’s disease: regions of degeneration and their neuropsychological correlates. Dement Geriatr Cogn Disord. 2007;23(2):96–103.
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N. E. van Haren, H. E. Hulshoff Pol, H. G. Schnack, W. Cahn, R. C. Mandl, D. L. Collins, A. C. Evans, and R. S. Kahn, “Focal Gray Matter Changes in Schizophrenia across the Course of the Illness: A 5-Year Follow-Up Study,” Neuropsychopharmacology, vol. 32, pp. 2057–66, 2007.
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2006

B. Aubert-Broche*, A. C. Evans, and D. L. Collins, “A new improved version of the realistic digital brain phantom,” Neuroimage, vol. 32, no. 1, pp. 138–45, 2006.
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B. Aubert-Broche*, M. Griffin, G.B. Pike, A.C. Evans, D.L. Collins. Twenty new digital brain phantoms for creation of validation image data bases. IEEE Trans Med Imaging. 2006 Nov;25(11):1410–6.
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M. M. Chakravarty*, G. Bertrand, C. Hodge, A. F. Sadikot, and D. L.Collins, “The creation of a brain atlas for image guided neurosurgery using serial histological data,” Neuroimage, vol. 30, no. 2, pp. 359–76, 2006.
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J.T. Chen*, D.L. Collins, H.L. Atkins, M.S. Freedman, A. Galal, D.L. Arnold; Canadian MS BMT Study Group. Brain atrophy after immunoablation and stem cell transplantation in multiple sclerosis. Neurology. 2006 Jun 27;66(12):1935–7
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S. Duchesne*, N. Bernasconi, A. Bernasconi, and D. L. Collins, MR-based neurological disease classification methodology: application to lateralization of seizure focus in temporal lobe epilepsy, NeuroImage, vol. 29, no. 2, pp. 557–566, 2006.
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H. E. Hulshoff Pol, H. G. Schnack, R. C. Mandl, R. G. Brans, N. E. van Haren, W. F. Baare, C. J. van Oel, D. L. Collins, A. C. Evans, and R. S. Kahn, Gray and white matter density changes in monozygotic and same-sex dizygotic twins discordant for schizophrenia using voxel-based morphometry, Neuroimage, vol. 31, no. 2, pp. 482–8, 2006.
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H.E. Hulshoff Pol, H.G. Schnack, D. Posthuma, R.C. Mandl, W.F. Baare, C. van Oel, N.E. van Haren, D.L. Collins, A.C. Evans, K. Amunts, U. Burgel, K. Zilles, E. de Geus, D.I. Boomsma, R.S. Kahn. Genetic contributions to human brain morphology and intelligence. J Neurosci. 2006 Oct 4;26(40):10235–42
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I. Reinertsen*, Collins DL. A realistic phantom for brain-shift simulations. Med Phys. 2006 Sep;33(9):3234–4
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2005

S. Bouix**, J. C. Pruessner, D. L. Collins, and K. Siddiqi, “Hippocampal shape analysis using medial surfaces,” Neuroimage, vol. 25, no. 4, pp. 1077–89, 2005.
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T. Arbel*, X. Morandi, R. Comeau, and D. L. Collins, “Automatic non-linear mri-ultrasound registration for the correction of intra-operative brain deformations,” Computer Aided Surgery, 2005.
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J. T. Chen*, D. L. Collins, M. S. Freedman, H. L. Atkins, and D. L. Arnold, “Local magnetization transfer ratio signal inhomogeneity is related to subsequent change in MTR in lesions and normal-appearing white-matter of multiple sclerosis patients,” Neuroimage, vol. 25, no. 4, pp. 1272–8, 2005.
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L. Mercier*, T. Lango, F. Lindseth, and D. L. Collins, “A review of calibration techniques for freehand 3-d ultrasound systems,” Ultrasound in Medicine and Biology, vol. 31, no. 4, p. 449, 2005.
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2004

N. Bernasconi, S. Duchesne*, A. Janke*, J. Lerch**, D. L. Collins, and A. Bernasconi, “Wholebrain voxel-based statistical analysis of gray matter and white matter in temporal lobe epilepsy,” Neuroimage, vol. 23, no. 2, pp. 717–23, 2004.
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J.-F. Mangin, D. Rivi`ere, A. Cachia, E. Duchesnay, Y. Cointepas, D. Papadopoulos-Orfanos, D. L. Collins, A. C. Evans, and J. R ́gis, “Object-based morphometry of the cerebral cortex,” IEEE Transactions on Medical Imaging, vol. 23, no. 8, pp. 968–82, 2004.
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J. F. Mangin, F. Poupon, E. Duchesnay, D. Riviere, A. Cachia, D. L. Collins, A. C. Evans, and J. Regis, “Brain morphometry using 3d moment invariants,” Med Image Anal, vol. 8, no. 3, pp. 187–96, 2004.
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J. T. Chen*, S. Narayanan, D. L. Collins, S. M. Smith, P. M. Matthews, and D. L. Arnold, “Relating neocortical pathology to disability progression in multiple sclerosis using mri,” Neuroimage, vol. 23, no. 3, pp. 1168–75, 2004. 1053–8119 Clinical Trial Journal Article.
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S. Robbins**, A. C. Evans, D. L. Collins, and S. Whitesides, “Tuning and comparing spatial normalization methods,” Med Image Anal, vol. 8, no. 3, pp. 311–23, 2004.
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S. D. Brass, S. Narayanan, J. P. Antel, Y. Lapierre, L. Collins, and D. L. Arnold, “Axonal damage in multiple sclerosis patients with high versus low expanded disability status scale score,” Can J Neurol Sci, vol. 31, no. 2, pp. 225–8, 2004.
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H. E. Hulshoff Pol, H. G. Schnack, R. C. W. Mandl, W. Kahn, N. E. M. van Haren, H. Koning, D. L. Collins, A. C. Evans, and R. S. Kahn, “Focal white matter density changes in schizophrenia: reduced inter-hemispheric connectivity,” NeuroImage, vol. 21, no. 1, pp. 27– 35, 2004.
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2003

P. Hellier, C. Barillot, I. Corouge, B. Gibaud, G.L. Goualher, D.L. Collins, A.C. Evans, G. Malandain, N. Ayache, G.E. Christensen, and H.J. Johnson, “Retrospective evaluation of inter-subject brain registration,” IEEE Transactions on Medical Imaging, vol. 22, no. 9, pp. 1120–30, 2003.
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S.B. Antel**, D.L. Collins, N. Bernasconi, F. Andermann, R. Shinghal, R.E. Kearney, D.L. Arnold, and A. Bernasconi, “Automated detection of focal cortical dysplasia lesions using computational models of their MRI characteristics and texture analysis,” NeuroImage, vol. 19, no. 4, pp. 1748–59, 2003
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2002 and earlier

S. Duchesne*, J. Pruessner, and D.L. Collins, “Appearance-based segmentation of medical temporal lobe structures,” NeuroImage, vol. 17, pp. 515–531, 2002.
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J.C. Pruessner, S. Kohler, J. Crane, M. Pruessner, C. Lord, A. Byrne, N. Kabani, D.L. Collins, and A.C. Evans, “Volumetry of temporopolar, perirhinal, entorhinal and parahippocampal coretex from high-resolution MR images: considering the variability of the collateral sulcus,” Cereb Cortex, vol. 12, no. 12, pp. 1342–53, 2002. 1047–3211 Journal Article.
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S.B. Antel**, L. Li, F. Cendes, D.L. Collins, R. Kearney, R. Shinghal, and D. Arnold, “Predicting surgical outcome in temporal lobe epilepsy patients using MRI and MRSI,” Neurology, vol. 58, pp. 1505–12, May 28 2002.
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S.B. Antel**, A. Vernasconi, N. Bernasconi, D.L. Collins, R. Kearney, R. Shinghal, and D. Arnold, “Computational models of MRI characteristics of focal cortical dylsplasia improve lesion detection,” NeuroImage, vol. 17, no. 4, pp. 1755–60, 2002.
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J.D. Atkinson, D.L. Collins, G. Bertrand, T.M. Peters, G.B. Pike, and A.F. Sadikot, “Optimum location of thalamotomy lesions for tremor associated with parkinson’s disease: a probabilistic approach based on post-operative MRI and an integrated digital atlas,” The Journal of Neurosurgery, vol. 96, no. 5, pp. 854–66, 2002.
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S. Narayanan, N. DeStefano, G.S. Francis, R. Arnoutelis, Z. Caramanos, D.L. Collins, D. Pelletier, B.G.W. Arnason, J.P. Antel, and D. L. Arnold, “Axonal metabolic recovery in multiple sclerosis patients treated with interferon β−1b,” J Neurology, vol. 248, pp.979–986, 2001
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J.C. Pruessner, D.L. Collins, M. Pruessner, S. Lupien, and A.C. Evans, “Age and gender predict volume decline in the anterior and posterior hippocampus in early adulthood,” J Neuroscience, vol. 21, no. 1, pp. 194–200, 2001.
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J. Maziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, D.L. Collins, P. Thompson, M. Macdonald, D. Iacoboni and, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, D. Boomsma, T. Cannon, and B. Kawashima, R. Mazoyer, “A probabilistic atlas and reference system for the human brain: International consortium for brain mapping (ICBM),” Philos Trans R Soc Lond Biol Sci, vol 356, pp. 1293–1322, Aug 2001.
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J. Mazziotta, A. Toga, A. Evans, P. Fox, J. Lancaster, K. Zilles, R. Woods, T. Paus, G. Simpson, B. Pike, C. Holmes, D.L. Collins, P. Thompson, D. Macdonald, M. Iacoboni, T. Schormann, K. Amunts, N. Palomero-Gallagher, S. Geyer, L. Parsons, K. Narr, N. Kabani, G. Le Goualher, J. Feidler, K. Smith, D. Boomsma, H. Hulshoff Pol, T. Cannon, B. Kawashima, and B. Mazoyer, “A four-dimensional probabilistic atlas of the human brain,” J Am Med Inform Assoc, vol. 8, no. 5, pp.401–30, 2001. 1067–5027 Journal Article.
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A. Bernasconi, S.B. Antel, D.L. Collins, N. Bernasconi, A. Olivier, F. Dubeau, G.B. Pike, F. Andermann, and D.L. Arnold, “Texture analysis and morphological processing of magnetic resonance imaging assist detection of focal cortical dysplasia in extra-temporal partial epilepsy,” Ann Neurol, vol. 49, no. 6, pp. 770–5, 2001.
(pdf)

T. Paus, D.L. Collins, A. Evans, G. Leonard, B. Pike, and A. Zijdenbos, “Maturation of white matter in the human brain: a review of magnetic resonance studies,” Brain Res Bull, vol. 54, no. 3, pp. 255–66, 2001.
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H.E. Hulshoff Pol, H.G. Schnack, R.C.W. Mandl, N.E.M. van Haren, H. Koning, D.L. Collins, A.C. Evans, and R.S. Kahn, “Focal gray matter density changes in schizophrenia,” Archives of General Psychiatry, vol.58, no. 12, pp. 1118–25, 2001.
(pdf)

M.K. Chung, K.J. Worsley, T. Paus, C. Cherif, D.L. Collins, J.N. Giedd, J.L. Rapoport, and A.C. Evans, “Unified statistical approach to deformation-based morphometry,” NeuroImage, vol. 14, no. 3, pp. 595–606, 2001.
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K.E. Watkins, T. Paus, J.P. Lerch, A. Zijdenbos, D.L. Collins, P. Neelin, J. Taylor, K.J. Worsley, and A.C. Evans, “Structural asymmetries in the human brain: a voxel-based statistical analysis of 142 MRI scans,” Cereb Cortex, vol. 11, no. 9, pp. 868–77, 2001.
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J Pruessner, L. Li, W. Serles, M. Pruessner, D.L. Collins, N. Kabani, S. Lupien, and A. Evans, “Volumetry of hippocampus and amygdala with high-resolution MRI and three-dimensional analysis software : minimizing the discrepancies between laboratories,” Cereb Cortex, vol. 10, no. 4, pp. 433–42, 2000.
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T. Paus, A. Zijdenbos, K. Worsley, D.L. Collins, J. Blumenthal, J.N. Giedd, J.L. Rapoport, and A.C. Evans, “Structural maturation of neural pathways in children and adolescents: In vivo study,” Science, vol. 283, pp. 1908–1911, March 19, 1999.
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G.L. Goualher, E. Procyk, D.L. Collins, R. Venegopal, C. Barillot, and A.C. Evans, “Automated extraction and variability analysis of sulcal neuroanatomy,” IEEE Transactions on Medical Imaging, vol. 18, pp. 206–217, March 1999.
(pdf)

D.L. Collins, A.P. Zijdenbos, V. Kollokian, J. Sled, N.J. Kabani, C.J. Holmes, and A.C. Evans, “Design and construction of a realistic digital brain phantom,” IEEE Transactions on Medical Imaging, vol. 17, no. 3, pp. 463–468, 1998.
(pdf)

C.J. Holmes, R. Hoge, D.L. Collins, R. Woods, A. Toga, and A.C. Evans, “Enhancement of MR images using registration for signal averaging,” Journal of Computer Assisted Tomography, vol. 22, pp. 324–333, Mar 1998.
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P. St-Jean, A.F. Sadikot, D.L. Collins, D. Clonda, R. Kasrai and A.C. Evans, “Automated atlas integration and interactive 3-dimensional visualization tools for planning and guidance in functional neurosurgery,” IEEE Transactions on Medical Imaging, vol. 17, no. 5, pp. 672–680, 1998.

J. Ashburner, P. Neelin, D.L. Collins, A. Evans, and K. Friston, “Incorporating prior knowledge into image registration,” NeuroImage, vol. 6, no. 4, pp. 344–52, 1997.
(pdf)

D.L. Collins and A.C. Evans, “Animal: validation and applications of non-linear registration-based segmentation,” International Journal and Pattern Recognition and Artificial Intelligence, vol. 11, pp. 1271–1294, Dec 1997.

S. Narayanan, L. Fu, E. Pioro, N. DeStefano, D.L. Collins, G. Francis, J. Antel, P. Matthews, and D.L. Arnold, “ Imaging axonal damage in multiple sclerosis : Spatial distribution of MRI lesions,” Annals of Neurology, vol. 41, pp. 385–391, 1997.
(pdf)

L.-Q. Fu, C. Wolfson, K. Worsley, N. De Stefano, D.L. Collins, S. Narayanan, and D.L. Arnold, “Statistics for investigation of multimodal MR imaging data and application to multiple sclerosis patients,” NMR in Biomedicine, vol. 9, pp. 339–346, 1996.
(pdf)

M. Preul, Z. Caramanos, D.L. Collins, J-G. Villemure, R. Leblanc, A. Olivier, R. Pokrupa, and D.L. Arnold, “Accurate, noninvasive diagnosis of human brain tumors by using proton magnetic resonance spectroscopy,” Nature Medicine, vol. 2, pp. 323–325, 1996.

D.L. Collins, C.J. Holmes, T.M. Peters, and A.C. Evans, “Automatic 3D model-based neuroanatomical segmentation,” Human Brain Mapping, vol. 3, no. 3, pp. 190–208, 1995.
(pdf)

M. Kamber, R. Shinghal, D.L. Collins, G.S. Francis, and A.C. Evans, “Model-based 3D segmentation of multiple sclerosis lesions in magnetic resonance brain images,” IEEE Transactions on Medical Imaging, vol. 14, pp. 442–453, Sept. 1995.

D.L. Collins, P. Neelin, T.M. Peters, and A.C. Evans, “Automatic 3D inter-subject registration of MR volumetric data in standardized Talairach space,” Journal of Computer Assisted Tomography, vol. 18, pp. 192–205, March/April 1994.

D. Arnold, G. Riess, P. Matthews, G. Francis, D.L. Collins, C. Wolfson, and J. Antel, “Use of proton magnetic resonance spectroscopy for monitoring disease progression in multiple sclerosis,” Ann Neurol, vol. 36, no. 1, pp. 76–82, 1994.
(pdf)

C.J. Henri, D.L. Collins, and T.M. Peters, “Optimization of projection geometry for few-view reconstruction of sparse objects,” Medical Physics, vol. 20, no. 5, pp. 1537–1547, 1993.
(pdf)

A.C. Evans, T.M. Peters, D.L. Collins, C.J. Henri, S. Marrett, G.B. Pike, and W. Dai, “3-D correlative imaging and segmentation of cerebral anatomy, function and vasculature,” Automedica, vol. 14, no. 1, pp. 65–80, 1992.

A.C. Evans, S. Marrett, P. Neelin, D.L. Collins, K. Worsley, W. Dai, S. Milot, E. Meyer and D. Bub, “Anatomical mapping of functional activation in stereotactic coordinate space,” NeuroImage, vol. 1, no. 1, pp. 43–53, 1992. (pdf)

A.C. Evans, S. Marrett, J. Torrescorzo, S. Ku and D.L. Collins, “MRI-PET correlation in three dimensions using a volume-of-interest (VOI) atlas,” Journal of Cerebral Blood Flow and Metabolism, vol. 11, pp. A69–78, Mar 1991.
(pdf)

C. Henri, D.L. Collins, and T. Peters, “Multi-modality image integration for stereotactic surgical planning,” Medical Physics, vol. 18, pp. 167–177, Mar/Apr 1991.
(pdf)

C.J. Henri, G.B. Pike, D.L. Collins, and T.M. Peters, “Three-dimensional display of cortical anatomy and vasculature: magnetic resonance angiography versus multimodality integration,” Journal of Digital Imaging, vol. 4, no. 1, pp. 21–27, 1991.
(pdf)

T.M. Peters, C.J. Henri, D.L. Collins, G.B. Pike, and A. Olivier, “Clinical applications of integrated 3-D stereoscopic imaging in neurosurgery,” Australasian Physical and Engineering Sciences in Medicine, vol. 13, no. 4, pp. 166–176, 1991.
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T.M. Peters, C.J. Henri, G.B. Pike, J.A. Clark, D.L. Collins and A. Olivier, “Integration of stereoscopic DSA with 3D image reconstruction for stereotactic planning,” Stereotactic and Functional Neurosurgery, vol. 55, pp. 471–476, 1990.

A.C. Evans, T.M. Peters, D.L. Collins, C.J. Henri, T. Marrett, G.B. Pike and W. Dai, “3-D correlative imaging and segmentation of cerebral anatomy, function and angiography,” IEEE Trans Eng Med Biol, vol. 12, no. 3, pp.1297–98, 1990.

T.M. Peters, J.A. Clark, G.B. Pike, C.J. Henri, D.L. Collins, D. Leksell and O. Jeppsson, “Stereotactic neurosurgery planning on a personal-computer-based work station,” Journal of Digital Imaging, vol. 2, no. 1, pp. 75–81, 1989.


Other refereed contributions/conference proceeding (since 2004, from 119 contributions total)

Please note that the following are 8–10 page peer-reviewed conference papers and are a normal step before publication of a journal article. In addition, the Annual Symposium on Information Processing in Medical Imaging (IPMI) accepts approximate 1 in 5 papers and Medical Image Computing and Computer Assisted Intervention (MICCAI) accepts 1 in 4 papers.

2017 

2016

Marta Kersten-Oertel, Ian J. Gerard, Simon Drouin, Kevin Petrecca, Jeffery A. Hall, D. Louis Collins: Towards Augmented Reality Guided Craniotomy Planning in Tumour Resections. MIAR 2016: 163-174

Gerard, I. J., Kersten-Oertel, M., Kochanowska, A., & Collins, D. L. (2016) The Validation Grid: A new tool to validate multimodal image registration. CARS 2016

Xiao, Y., Gerard, I. J., Fonov, V., De Nigris, D., Therrien, C., Aubert-Broche, B., Drouin, S., Kochanowska, A., Tampieri, D., & Collins, D. L. (2016). Atlas-guided transcranial Doppler ultrasound examination with a neuro-surgical navigation system: case study. 4th Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging, LNCS 9401, pp. 1–9

Gerard, I. J., Kersten-Oertel, M., Drouin, S., Hall, J. A., Petrecca, K., De Nigris, D., Arbel, T., & Collins, D. L. (2016). Improving Patient Specific Neurosurgical Models with Intraoperative Ultrasound and Augmented Reality Visualizations in a Neuronavigation Environment.  4th Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging, LNCS 9401, pp. 1–8

Tahaei, Marzieh S., Andrew J. Reader, D. Louis Collins. “PET Image Restoration for Neurological Applications”, Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC), 2016 IEEE.

Tahaei, Marzieh S., Andrew J. Reader, D. Louis Collins. “MR-Guided PET Image Denoising”, Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC), 2016  IEEE.

2015

Simon Drouin, Marta Kersten-Oertel, D. Louis Collins, (2015) “Interaction-based registration corection for improved augmented reality overlay in neurosurgery”, Augmented Environments for Computer Assisted Interventions’ (Proceedings of MICCAI AE-CAI Workshop 2015) Lecture Notes in Computer Science, Volume 9365:21–29, 2015. (pdf)

Marta Kersten-Oertel, Ian J. Gerard, Simon Drouin, Kelvin Mok, Denis Sirhan, David S. Sinclair, D. Louis Collins. (2015) “Augmented Reality for Specific Neurovascular Surgical Tasks”, Augmented Environments for Computer Assisted Interventions’ (Proceedings of MICCAI AE-CAI Workshop 2015) Lecture Notes in Computer Science, Volume 9365:92–103, 2015 (pdf)

Stoyanov, D., Collins, D.L., Sakuma, I., Abolmaesumi, P., Jannin, P. (2015). “Information processing in computer-assisted interventions: 5th international conference, 2014” in International Journal of Computer Assisted Rasiology and Surgery (pp. 1355–1356). Springer Internation Publishing. (pdf)

B. Aubert-Broche, V. Fonov, K. Weier, S. Narayanan, D.L. Arnold, B. Banwell, D.L. Collins (2015). “Is it possible to differentiate the impact of pediatric monophasic demyelinating disorders and multiple sclerosis after a first episode of demyelination?”, in Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data: Lecture Notes in Computer Science (pp. 38–45). Springer International Publishing. (pdf)

R. Giraud, V. Ta, N. Papadakis, D.L. Collins, P. Coupé. (2015, September). Optimisation de l’algorithme PatchMatch pour la segmentation de structures anatomiques. XXVe Colloque GRETSI – Traitement du Signal et des Images Lyon. Lyon, France. (pdf)

2014

Eskildsen, S. F., Coupé, P., Fonov, V., & Collins, D. L. (2014). Detecting Alzheimer’s disease by morphological MRI using hippocampal grading and cortical thickness. In Medical Image Computing and Computer Assisted Intervention conference 2014 (pp. 38–47). (pdf)

Bériault, S., Archambault-Wallenburg, M., Sadikot, A. F., Collins, D. L., & Pike, G. B. (2014). Automatic Markov Random Field Segmentation of Susceptibility-Weighted MR Venography. In Clinical Image-Based Procedures. Translational Research in Medical Imaging (pp. 39–47). Springer International Publishing. (pdf)

De Nigris, D., Collins, D. L., & Arbel, T. (2014). SymBA: Diffeomorphic Registration Based on Gradient Orientation Alignment and Boundary Proximity of Sparsely Selected Voxels. In Biomedical Image Registration (pp. 21–30). Springer International Publishing. (pdf)

Elliott, C., Arnold, D. L., Collins, D. L., & Arbel, T. (2014). A Generative Model for Automatic Detection of Resolving Multiple Sclerosis Lesions. In Bayesian and grAphical Models for Biomedical Imaging (pp. 118–129). Springer International Publishing. (pdf)

Kersten-Oertel, M., Gerard, I., Drouin, S., Mok, K., Sirhan, D., Sinclair, D., & Collins, D. L. (2014). Augmented Reality in Neurovascular Surgery: First Experiences. In Augmented Environments for Computer-Assisted Interventions(pp. 80–89). Springer International Publishing. (pdf)

Komlagan, M., Ta, V. T., Pan, X., Domenger, J. P., Collins, D. L., & Coupé, P. (2014). Anatomically Constrained Weak Classifier Fusion for Early Detection of Alzheimer’s Disease. In Machine Learning in Medical Imaging (pp. 141–148). Springer International Publishing. (pdf)

Rivaz, H., & Collins, D. L. (2014). Simulation of Ultrasound Images for Validation of MR to Ultrasound Registration in Neurosurgery. In Augmented Environments for Computer-Assisted Interventions (pp. 23–32). Springer International Publishing. (pdf)

Ta, V. T., Giraud, R., Collins, D. L., & Coupé, P. (2014). Optimized PatchMatch for Near Real Time and Accurate Label Fusion. In Medical Image Computing and Computer-Assisted Intervention–MICCAI 2014 (pp. 105–112). Springer International Publishing. (pdf)

Zelmann, R., Beriault, S., Mok, K., Haegelen, C., Hall, J., Pike, G. B., Olivier, A & Collins, D. L. (2014). Automatic Optimization of Depth Electrode Trajectory Planning. In Clinical Image-Based Procedures. Translational Research in Medical Imaging (pp. 99–107). Springer International Publishing. (pdf)

2013

Archambault-Wallenburg, M., Arnold, D., Narayanan, S., Pike, G. B., & Collins, D. L. (2013). Cortical Surface Analysis of Multi-contrast MR Data to Improve Detection of Cortical Pathology in Multiple Sclerosis. In Multimodal Brain Image Analysis (pp. 138–149). Springer International Publishing. (pdf)

Bériault, S., Drouin, S., Sadikot, A. F., Xiao, Y., Collins, D. L., & Pike, G. B. (2013). A prospective evaluation of computer-assisted deep brain stimulation trajectory planning. In Clinical Image-Based Procedures. From Planning to Intervention (pp. 42–49). Springer Berlin Heidelberg. (pdf)

Karimaghaloo Z, Rivaz H, Arnold DL, Collins DL, Arbel T. Adaptive voxel, texture and temporal conditional random fields for detection of Gad-enhancing multiple sclerosis lesions in brain MRI. Med Image Comput Comput Assist Interv. 2013;16(Pt 3):543–50. PubMed PMID: 24505804 (pdf)

Kersten-Oertel, M., Drouin, S., Chen, S. J., & Collins, D. L. (2013). Volume Visualization for Neurovascular Augmented Reality Surgery. In Augmented Reality Environments for Medical Imaging and Computer-Assisted Interventions(pp. 211–220). Springer Berlin Heidelberg. (pdf)

Subbanna NK, Precup D, Collins DL, Arbel T. Hierarchical probabilistic Gabor and MRF segmentation of brain tumours in MRI volumes. Med Image Comput Comput Assist Interv. 2013;16(Pt 1):751–8. PubMed PMID: 24505735 (pdf)

R. Zelman, D.L. Collins, “Automatic Optimization of Depth Electrode Trajectory Planning”, MICCAI 2013 Workshop on Clinical Image-based Procedures: Translational Research in Medical Imaging (pdf)

Xiao, Y., Bailey, L., Chakravarty, M. M., Beriault, S., Sadikot, A. F., Pike, G. B., & Collins, D. L. (2012). Atlas-Based segmentation of the subthalamic nucleus, red nucleus, and substantia nigra for deep brain stimulation by incorporating multiple MRI contrasts. In Information Processing in Computer-Assisted Interventions (pp. 135–145). Springer Berlin Heidelberg. (pdf)

2012

Bérengère Aubert- Broche, Vladimir Fonov, Daniel García-Lorenzo, Abderazzak Mouiha, Nicolas Guizard, Pierrick Coupé, Simon Eskildsen, D. L. Collins, “A New Framework for Analyzing Structural Volume Changes of Longitudinal Brain MRI Data”, Spatio-temporal Image Analysis for Longitudinal and Time-Series Image Data, MICCAI 2012, Lecture Notes in Computer Science 7570, pp. 50- 62, 2012. (pdf)

Silvain Bériault, Simon Drouin, Abbas F. Sadikot, Yiming Xiao, D. Louis Collins, G. Bruce Pike, “A Prospective Evaluation of Computer-Assisted Deep Brain Stimulation Trajectory Planning”, Proceedings of the MICCAI Workshop on Clinical Image-based Procedures: From Planning to Intervention (MICCAI CLIP), Nice, France, 5.10.2012 (pdf)

S. Beriault, Y. Xiao, L. Bailey, D.L. Collins, A.F. Sadikot, and G.B. Pike, “Towards Computer-Assisted Deep Brain Stimulation Targeting with Multiple Active Contacts”, N. Ayache et al. (Eds.): MICCAI 2012, Part I, LNCS 7510, pp. 487–494, 2012. (pdf)

Sean Jy-Shyang Chen, Marta Kersten-Oertel, Simon Drouin, D. Louis Collins, (2012) “Visualizing the path of blood flow for image guided surgery of cerebral arteriovenous malformations”, Proc. SPIE 8316, Medical Imaging 2012: Image-Guided Procedures, Robotic Interventions, and Modeling (pdf)

Pierrick Coupé, Simon F. Eskildsen, José Manjón, Vladimir Fonov, Jens C. Pruessner, Michèle Allard, D. Louis Collins: SNIPE: A New Method to Identify Imaging Biomarker for Early Detection of Alzheimer’s Disease, Workshop on Novel Neuroimaging Biomarkers for Alzheimer’s Disease, MICCAI 2012 pg 41–51. (pdf)

Simon Drouin, Marta Kersten-Oertel, Sean Jy-Shyang Chen, D. Louis Collins, (2012) “A Realistic Test and Development Environment for Mixed Reality in Neurosurgery”, Augmented Environments for Computer Assisted Interventions’ (Proceedings of MICCAI AE-CAI Workshop 2011) Lecture Notes in Computer Science, Volume 7264:13–23, 2012 (pdf)

O. Coulon, V. Fonov, J-F Mangin and D.L. Collins, “Atlas-based Clustering of Sulcal Patterns – Application to the Left Inferior Frontal Sulcus”, ISBI 2012, Barcelona, Spain, May 2–5, 2012. (pdf)

D. De Nigris, D. L. Collins, T. Arbel, “Fast and Robust Registration based on Gradient Orientations: Case Study Matching Intra-operative Ultrasound to Pre-operative MRI in Neurosurgery”, In Proceedings of the 3rd International Conference on Information Processing in Computer-Assisted Interventions (IPCAI 2012), Pisa, Italy, June 2012 (pdf)

Simon F. Eskildsen, Pierrick Coupé, Daniel García-Lorenzo, Vladimir Fonov, Jens C. Pruessner and D. Louis Collins: Improving prediction of Alzheimer’s disease using patterns of cortical thinning and homogenizing images according to disease stage, Workshop on Novel Neuroimaging Biomarkers for Alzheimer’s Disease, MICCAI 2012. (pdf)

Vladimir Fonov, Pierrick Coupe, Jose Manjon, Simon Eskildsen, D. Louis Collins: Multi-atlas labeling with population-specific template and non-local patch-based label fusion, Grand Challenge and Workshop on Multi-Atlas Labeling, pages 63–66, MICCAI 2012. (pdf)

Nicolas Guizard, Vladimir Fonov, Daniel Garca-Lorenzo, Brengre Aubert-Broche, Simon Eskilden, D. Louis Collins: Spatio-temporal regularization for longitudinal registration to an unbiased 3D individual template, MICCAI 2012, Lecture Notes in Computer Science 7570, pp. 1–12, 2012. (pdf)

Z. Karimaghaloo , D.L Arnold, D.L. Collins and T. Arbel, “Hierarchical Conditional Random Fields for Detection of Gad-Enhancing Lesions in Multiple Sclerosis” Ayache et al. (Eds.): MICCAI 2012, Part II, LNCS 7511, pp. 379–386, 2012. (pdf)

M. Kersten-Oertel, S.S.J. Chen, S. Drouin, D.S. Sinclair and D. L. Collins, “Augmented Reality Visualization for Guidance in Neurovascular Surgery”, Studies in Health Technology and Informatics volume 163, Proceedings of MMVR, pp 225–229, Conference, Newport Beach, CA, February 9–11, 2012. (pdf)

H. Rivas and D.L. Collins, “Self-Similarity Weighted Mutual Information: A New Nonrigid Image Registration Metric”, N. Ayache et al. (Eds.): MICCAI 2012, Part III, LNCS 7512, pp. 91–98, 2012. (pdf)

2011

Coupé P, Eskildsen SF, Manjon JV, Fonov V, Collins DL; Alzheimer’s Disease Neuroimaging Initiative. Simultaneous segmentation and grading of hippocampus for patient classification with Alzheimer’s disease. Med Image Comput Comput Assist Interv. 2011;14(Pt 3):149–57 – Lecture Notes in Computer Science 6893 (pdf)

Simon Fristed Eskildsen, Pierrick Coupé, Kelvin K. Leung, Vladimir Fonov, Nicolas Guizard, Shafik N. Wassef, Lasse Riis Østergaard and D. Louis Collins: BEaST: Brain extraction using multiresolution nonlocal segmentation, Workshop on Multi-Atlas Labeling and Statistical Fusion, MICCAI 2011. (pdf)

S.F. Eskildsen, V. Fonov, P. Coupé, L.R. Østergaard and D.L. Collins: Prediction of Alzheimer’s disease in subjects with mild cognitive impairment using structural patterns of cortical thinning, NBC 2011, IFMBE Proceedings, vol. 34, pp. 156–159, 2011. (pdf)

S. Hu, P. Coupe, J. C. Pruessner, and D. L. Collins. Validation of appearance-model based segmentation with patch-based refinement on medial temporal lobe structures. In Proc. of MICCAI 2011 Workshop on Multi-Atlas Labeling and Statistical Fusion, pages 28–37, Toronto, ON, Canada, Sept. 2011 (pdf)

S.H. Kim, V. Fonov, J. Piven, J. Gilmore, the IBIS Network, C. Vachet, G. Gerig, D.L. Collins and M. Styner, “Spatial Intensity Prior Correction for Tissue Segmentation in the Developing Human Brain”, 8th International Symposium on Biomedical Engineering, Chicago, IL, March 30-April 2, 2011. (pdf)

N.K. Subbanna, S.J. Francis, D. Precup, D.L. Collins and T. Arbel, “Adapted MRF Segmentation of MS Lesions Using Local Contextual Information”, Medical Image Understanding and Analysis 2011 (MIUA 2011), London, U.K., July 14, 2011. (pdf)

2010

P. Coupé, J. Manjon, V. Fonov, J. Pruessner, M. Robles and D.L. Collins, “Nonlocal Patch-based label fusion for Hippocampus Segmentation,” #615. MICCAI 2010, 13th International Conference on Medical Image Computing and Computer Assisted Intervention, Beijing, China, September 20–24, 2010. (pdf)

S.J. Chen, P. Hellier, J-Y Gauvrit, M. Marchal, X. Morandi and D.L. Collins, An anthropomorphic polyvinyl alcohol triple modality brain phantom based on Colin27,” #314. MICCAI 2010, 13th International Conference on Medical Image Computing and Computer Assisted Intervention, Beijing, China, September 20–24, 2010. (pdf)

C.L. Tardif, D.L. Collins, S.F. Eskildsen, J.B. Richardson and G.B. Pike, “Segmentation of Cortical Multiple Sclerosis Lesions on MRI using Automated Laminar Profile Shape Analysis,” #896. MICCAI 2010, 13th International Conference on Medical Image Computing and Computer Assisted Intervention, Beijing, China, September 20–24, 2010. (pdf)

C. Elliott, S. Francis, D.L. Arnold, D.L. Collins and T. Arbel, “Bayesian classification of Multiple Sclerosis lesions in longitudinal MRI using subtraction images,” #1026. MICCAI 2010, 13th International Conference on Medical Image Computing and Computer Assisted Intervention, Beijing, China, September 20–24, 2010. (pdf)

D. DeNigris, L. Mercier, R. Del Maestro, D.L. Collins and T. Arbel, “Hierarchical Multimodal Image Registration Based on Adaptive Local Mutual Information,” #1197. MICCAI 2010, 13th International Conference on Medical Image Computing and Computer Assisted Intervention, Beijing, China, September 20–24, 2010. (pdf)

V. Fonov, A. Janke, Z. Caramanos, D. L. Arnold, S. Narayanan, G.B. Pike and D.L. Collins, “Improved precision in the measurement of longitudinal global and regional volumetric changes via a novel MRI gradient distortion characterization and correction technique,” MIAR 2010, 5th International Workshop on Medical Imaging and Augmented Reality, September 19–20, 2010, Beijing, China. Lecture Notes in Computer Science v6326, p324–333, 2010, Springer. (pdf)

N. Guizard, P. Coupe, N. Stifani, S. Stifani and D. L. Collins, “Robust 3D Reconstruction and Mean-Shift Clustering of Motoneurons from Serial Histological Images,” MIAR 2010, 5th International Workshop on Medical Imaging and Augmented Reality, September 19–20, 2010, Beijing, China. Lecture Notes in Computer Science, Springer, p191–199. (pdf)

N. Guizard, V. Fonov, B. Aubert-Broche and D.L. Collins, “Impact of Non-Linear Registration Symmetry in Longitudinal MRI Studies”, Spatio Temporal Image Analyses (STIA), Medical Image Computing and Computer Assisted Intervention Conference (MICCAI) 2010, September 2010, Beijing, China.

R. Rajalingham, M. Toews, D.L. Collins and T. Arbel, “Exploring Cortical Folding Pattern Variability Using Local Image Features”, Workshop on Medical Computer Vision (MCV) Medical Image Computing and Computer Assisted Intervention 2010 (MICCAI 2010), Beijing, China, September 2010, Volume 6533/2011, 43–53. (pdf)

2009

D.L. Collins and J.C. Preussner, “Towards accurate, automatic segmentation of the hippocampus and amygdala from MRI”, paper #1001. Medical Image Computing and Computer Assisted Intervention 2009 (MICCAI 2009), London, September 20–24, 2009.
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J. Lecoeur, J-C. Ferré, D.L. Collins, S. Morrissey, and C. Barrillot, “Multi Channel MRI Segmentation with Graph Cuts Using Spectral Gradient and Multidimensional Gaussian Mixture Model,” in Proceedings of SPIE Medial Imaging 2009: Image Processing. J-P. Pluim, B.M. Dawant (eds.), Vol. 7259, Orlando, USA, February 2009.
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M. Toews, W. Wells III, D.L. Collins, and T. Arbel, “Feature-based Morphometry.” Medical Image Computer Assisted Intervention 2009 (MICCAI 2009), International Conference on Medical Image Computing and Computer Assisted Intervention, London, September 20–24, 2009.
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M. Toews, D.L. Collins, and T. Arbel, “Automatically learning cortical folding patterns.”, ISBI 2009 IEEE International Symposium on Biomedical Imaging (Boston).
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P. Coupé, J.V. Manjon, E.Gedamu, D. Arnold, M. Robles and D. L. Collins, “An Object-based Methid for Rician Noise Estimation in MR Images. Medical Image Computing and Computer Assisted Intervention 2009 (MICCAI 2009), London, September 20–24, 2009.
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D. Garcia-Lorenzo, J. Lecoeur, D. L. Arnold, D. L. Collins, and C. Barillot, “Multiple sclerosis lesion segmentation using an automatic multimodal Graph Cuts.” Medical Image Computing and Computer Assisted Intervention 2009 (MICCAI 2009), London, September 20–24, 2009.
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Chen, S., *I. Reinertsen, L. Mercier, D.L. Collins, “Intraoperative Volumetric Vessel-based Image Registration”, Workshop on Geometric accuracy in Image-guided interventions, Medical Image Computing and Computer Assisted Intervention 2009 (MICCAI 2009), London, September 20, 2009.

Subbanna, N., Shah, M, Francis, S.J., Narayanan, S., D.L. Collins, D.L. Arnold and T. Arbel, “MS Lesion Segmentation using Markov Random Fields”, Workshop on Medical Image Analysis in Multiple Sclerosis (MIAMS), Medical Image Computing and Computer Assisted Intervention 2009 (MICCAI 2009), London, September 20, 2009.

Shah, M, Xiao, Y., Francis, S.J., D.L. Arnold, D.L. Collins and T. Arbel, “Effectiveness of Intensity Normalization on MRIs of Human Brains with Multiple Sclerosis”, Workshop on Medical Image Analysis in Multiple Sclerosis (MIAMS), Medical Image Computing and Computer Assisted Intervention 2009 (MICCAI 2009), London, September 20, 2009.

Guizard, *N., Fonov, V, D.L. Collins, “Symmetric Optimization Scheme versus Constrained Symmetrization for Non-Linear Registrations”, Workshop on Medical Image Analysis in Multiple Sclerosis (MIAMS), Medical Image Computing and Computer Assisted Intervention 2009 (MICCAI 2009), London, September 20, 2009.

Derakhshan, M., Z. Caramanos, S. Narayanan, P. Giacomini, J. Maranzano, T. Li, S.J. Francis, D.L. Collins and D.L. Arnold, “An Evaluation of Automated Techniques for the Quantification of Grey Matter Atrophy in Multiple Sclerosis”, Workshop on Medical Image Analysis in Multiple Sclerosis (MIAMS), Medical Image Computing and Computer Assisted Intervention 2009 (MICCAI 2009), London, September 20, 2009.

2008

M. M. Chakravarty*, B. Bedell, S. Zehntner, A. Evans, and D. L. Collins, “Three-dimensional reconstruction of serial histological mouse brain sections,” in Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on, (Paris), pp. 987–90, 2008.

M. M. Chakravarty*, P. Rosa-Neto, S. Broadbent*, A. Evans, and D. L. Collins, “Development of fmri techniques for planning in functional neurosurgery for parkinsons disease,” in Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on, (Paris), pp. 1259–1262, 2008.

E. L. Gedamu*, A. Gedamu*, D. L. Arnold, and D. L. Collins, “MRI inter-packet movement correction for images acquires with non complementary data,” in Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on, (Paris), pp. 416–419, 2008.

B. Aubert-Broche*, Fonov* V, Leppert I, Pike GB, Collins DL. Human brain myelination from birth to 4.5 years. Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv 2008; 11: 180–7.
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2006

B. Aubert-Broche*, C. Grova, A. Reilhac, A. C. Evans, and D. L. Collins, “Realistic simulated mri and spect databases – application to spect/mri registration evaluation,” in MICCAI, vol. LNCS, (Copenhagen), pp. I–330, Springer, 2006.
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M. M. Chakravarty*, A. F. Sadikot, S. Mongia, G. Bertrand, and D. L.Collins, “Toward a multi-modal atlas for neurosurgical planning,” in MICCAI, vol. LNCS, (Copenhagen), pp. II–389, Springer, 2006.

L. Fu*, V. Fonov*, G. B. Pike, A. C. Evans, and D. L. Collins, “Automated analysis of multi site mri phantom data for the nihpd project,” in MICCAI, vol. LNCS, (Copenhagen), pp. II–144, Springer, 2006.
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G. Grabner*, A. L. Janke*, M. M. Budge, D. Smith, J. Pruessner, and D. L. Collins, “Symmetric atlasing and model based segmentation: An application to the hippocampus in older adults,” in MICCAI, vol. LNCS, (Copenhagen), pp. II–58, Springer, 2006.
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M. Toews**, D. L. Collins, and T. Arbel, “A statistical parts-based appearance model of inter-subject variability,” Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv, vol. 9, no. Pt 1, pp. 232–40, 2006.
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2005

M. M. Chakravarty*, A. Sadikot, J. Germann, G. Bertrand, and D. L. Collins, “Anatomical and electrophysiological validation of an atlas for neurosurgical planning,” in Medical Image Computing and Computer-Assisted Intervention, MICCAI 2005, 8th International conference (J. S. Duncan and G. Gerig, eds.), vol. Vol.2 of Medical Image Computing and Computer-Assisted Intervention – MICCAI 2005. 8th International Conference. Proceedings. (Lecture Notes in Comput. Sci. Vol.3750), (Palm Springs, USA), pp. 394–401, Springer-Verlag, 2005.
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S. Duchesne*, A. Caroli, C. Geroldi, G. Frisoni, and D. L. Collins, “Predicting clinical variable from mri features: Application to mmse in mci,” in Medical Image Computing and Computer-Assisted Intervention, MICCAI 2005, 8th International conference (J. S. Duncan and G. Gerig, eds.), vol. Vol.1 of Medical Image Computing and Computer-Assisted Intervention – MICCAI 2005. 8th International Conference. Proceedings. (Lecture Notes in Comput. Sci. Vol.3749), (Palm Springs, USA), pp. 392–399, Springer-Verlag, 2005.
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M. Toews**, D. L. Collins, and T. Arbel, “Maximum a posteriori local histogram estimation for image registration,” in Medical Image Computing and Computer-Assisted Intervention, MICCAI 2005, 8th International conference (J. S. Duncan and G. Gerig, eds.), vol. Vol.2 of Medical Image Computing and Computer-Assisted Intervention MICCAI 2005. 8th International Conference. Proceedings. (Lecture Notes in Comput. Sci. Vol.3750), (Palm Springs, USA), pp. 163–170, Springer-Verlag, 2005.
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2004

M. Descoteaux**, D. L. Collins, and K. Siddiqi, “Geometric flows for segmenting vasculature in MRI: Theory and validation,” in MICCAI 2004, 7th International conference (C. Barillot, D. Haynor, and P. Hellier, eds.), vol. 3216 of LNCS, (Saint-Malo, France), p. 500, Springer Verlag, Germany, 2004.
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S. Duchesne*, N. Bernasconi, A. Bernasconi, and D. L. Collins, “Temporal lobe epilepsy surgical outcome prediction,” in MICCAI 2004, (C. Barillot, D. Haynor, and P. Hellier, eds.), vol. 3217 of LNCS, (Saint-Malo, France), p. 696, Springer-Verlag, 2004.
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I. Reinertsen*, M. Descoteaux, S. Drouin, K. Siddiqi, and D. L. Collins, “Vessel driven correction of brain shift,” in MICCAI 2004, 7th International conference (C. Barillot, D. Haynor, and P. Hellier, eds.), vol. 3217 of LNCS, (Saint-Malo, France), p. 208, Springer Verlag, Germany, 2004.
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2003

S. Duchesne*, N. Bernasconi, A. Janke, A. Bernasconi, and D.L. Collins, “Temporal lobe epilepsy lateralization based on MR image intensity and registration features,” in Medical Image computing and Computer-Assisted Intervention – MICCAI 2003, 6th International Conference, Montréal, Canada, November 15–18, 2003, Proceedings., Part II (R.E. Ellis and T.M. Peters, eds.), vol. 2879 of Lecture Notes in Computer Science, pp. 367–374, Springer, 2003.

S. Prima*, D.L. Arnold, and D.L. Collins, “Multivariate statistics for detection of ms activity in serial multimodal MR images,” in Medical Image Computing and Computer-Assisted Intervention – MICCAI 2003, 6th International Conference, Montréal, Canada, November 15–18, 2003, Proceedings, Part II (R.E. Ellis and T.M. Peters, eds.), vol. 2879 of Lecture Notes in computer Science, pp. 663–670, Springer, 2003.

J-F. Mangin, F. Poupon, D. Rivière, A. Cachia, D.L. Collins, A.C. Evans, and J. Régis, “3D moment invariant based morphometry,” in Medical Image Computing and Computer-Assisted Intervention – MICCAI 2003, 6th International Conference, Montréal, Canada, November 15–18, 2003, Proceedings, Part II (R.E. Ellis and T.M. Peters, eds.), vol. 2879 of Lecture Notes in Computer Science, pp. 505–512, Springer, 2003.
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J-F. Mangin, D. Rivière, A. Cachia, D. Papadopoulos-Orfanos, D. L. Collins, A.C. Evans, and J. Régis, “Object-based strategy for morphometry of the cerebral cortex,” in Proceedings of the Annual Symposium on Information Processing in Medical Imaging (IPMI), vol. 2732 of Lecture notes in Computer science, pp. 160–171, Springer, 2003.
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†S. Robbins**, A.C. Evans, D.L. Collins, and S. Whitesides, “Tuning and comparing spatial normalization methods,” in Medical Image Computing and Computer-Assisted Intervention – MICCAI 2003, 6th International Conference, Montréal, Canada, November 15–18, 2003, Proceedings, Part II (R.E. Ellis and T.M. Peters, eds.) vol. 2879 of Lecture Notes in Computer Science, pp. 910–917, Springer, 2003.
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M.M. Chakravarty*, G. Bertand, M. Descoteaux, A.F. Sadikot, and D.L. Collins, “The creation of a brain atlas for image guided neurosurgery using serial histological data,” vol. 2879 of Lecture Notes in Computer Science, (Montreal, Que., Canada), P. 343, Springer Verlag, Heidelberg, D-69121, Germany, 2003.
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2002 and earlier

S. Duchesne*, N. Bernasconi, A. Bernasconi, and D.L. Collins, “On the classification of temporal lobe epilepsy using MR image appearance,” vol. 1 of Proceedings, 16th International Conference on Pattern Recognition, (Quebec City, Que., Canada), p. 520, IEEE Comput. Soc., 2002.

S. Prima*, N. Ayache, A. Janke, S.J. Francis, D.L. Arnold, and D.L. Collins, “Statistical analysis of longitudinal MRI data : Applications for detection of disease activity in MS,” in Medical Image Computing and Computer-Assisted Intervention – MICCAI 2002, 5th International conference, Tokyo, Japan, September 25–28, 2002, Proceedings, Part I (T. Dohi and R. Kikins, eds.), vol. 2488 of Lecture Notes in Computer Science, pp. 363–371, Springer, 2002.

D.L. Collins, J. Montagnat, A.P. Zijdenbos, A.C. Evans, and D.L. Arnold, “Automated estimation of brain volume in multiple sclerosis with BICCR,” in Proc. of the Annual Symposium on Information Processing in Medical Imaging (M.F. Insana and R.M. Leahy, eds.), vol. 2082 of LNCS, pp. 141–147, Springer, 2001.

S. Bouix**, J. Pruessner, D.L. Collins, and K. Siddiqi, “Hippocampal shape analysis using medial surfaces,” in Proc. Of the 2001 Medical Image Computing and Computer-Assisted Intervention Conference, (Utrecht, Netherlands), pp. 33–40, October 2001.
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S. Duchesne* and D.L. Collins, “Analysis of deformation fields for appearance-based segmentation,”, in Proceedings of the 2001 Medical Image Computing and Computer-Assisted Intervention Conference, (Utrecht, Netherlands), pp. 1189–1190, October 2001.

S. Duchesne*, J. Pruessner, and D.L. Collins, “Appearance-based modeling and segmentation of the hippocampus from MR images,” in Proceedings of the 23rd annual Conference of the IEEE engineering in Medicine and Biology Society, (Istanbul, Turkey), October 2001.
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T. Arbel*, X. Morandi, R. Comeau, and D.L. Collins, “Automatic non-linear MRI-ultrasound registration for the correction of intra-operative brain deformations,” in Proceedings of the 2001 Medical Image Computing and Computer-Assisted Intervention conference, (Utrecht, Netherlands), pp. 913–922, October 2001.
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P. Hellier, C. Barillot, I. Corouge, B. Gibaud, G.L. Goualher, D.L. Collins, A.C. Evans, G. Malandain, and N. Ayache, “Retrospective evaluation of inter-subject brain registration,” in Proceedings of the 2001 Medical Image Computing and Computer-Assisted Intervention Conference, (Utrecht, Netherlands), pp. 258–265, October 2001.
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D.L. Collins, A.P. Zijdenbos, W.F.C. Barré, and A.C. Evans, “ANIMAL+INSECT: Improved cortical structure segmentation,” in Proc. Of the Annual Symposium on Information Processing in Medical Imaging, (A. Kuba, M. Samal, and A. Todd-Pokropek, eds.), vol. 1613 of LNCS, p.p. 210–223, Springer, 1999.

D.L. Collins, G. LeGoualher, and A.C. Evans, “Non-linear cerebral registration with sulcal constraints,” in First International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 974–984, 1998. Abstract no. 92.
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G. LeGoualher, D.L. Collins, C. Barillot, and A.C. Evans, “Automatic identification of cortical sulci using a 3D probabilistic atlas,” in First International Conference on Medical Image Computing and Computer-Assisted Intervention, vol. 1496 of Lecture Notes in Computer Science, p. 509, 1998. Abstract no. 91.
(pdf)

D.L. Collins, G. LeGoualher, R. Venugopal, Z. Caramanos, A.C. Evans, and C. Barillot, “Cortical constraints for non-linear cortical registration,” in Proceedings of the International Conference on Visualization in Biomedical Computing (K. Höene, ed.) pp. 307–316, SPIE, 1996.

D.L. Collins, A.C. Evans, C. Holmes, and T.M. Peters, “Automatic 3D segmentation of neuro-anatomical structures from MRI,” in Proceedings of the Annual Symposium on Information Processing in Medical Imaging (IPMI) (Y. Bizais, C. Baillot, and R. DiPaola, eds.), (Brest, France), pp. 139.152, IPMI, Kluwer, Aug 1995.
(pdf)

M. Kamber, R. Shinghal, A.C. Evans, D.L. Collins, and G.S. Francis, “Knowledge-based interpretation of magnetic resonance images: Detecting multiple sclerosis lesions,” in Proceedings of the 4th Conference on Artificial Intelligence in Medicine Europe, (Munich), pp. 32–43, October 1994.

D.L. Collins, T.M. Peters, and A.C. Evans, “An automated 3D non-linear deformation procedure for determination of gross morphometric variability in human brain,” in Proceedings of the International Conference on Visualization in Biomedical Computing, vol. 2359, pp. 180–190, SPIE, 1994.
(pdf)

D.L. Collins, W. Dai, T.M. Peters, and A.C. Evans, “Model-based segmentation of individual brain structures from MRI data,” Visualization in Biomedical Computing 1992: Proc SPIE, vol. 1808, pp. 10–23, 1992.
(pdf)

D.L. Collins, T.M. Peters, and A.C. Evans, “Multiresolution image registration and brain structure segmentation,” in Proceedings of the IEEE Symposium on Advanced Medical Image Processing in Medicine, pp. 105–110, 1992.

C.J. Henri, D.L. Collins, and T.M. Peters, “Towards frameless Stereotaxy : anatomical-vascular correlation,” in Proceedings of the Second Conference on Visualization I Biomedical Computing (R.A. Robb, ed.) vol. 1808, pp. 10–23, SPIE, 1992.
(pdf)

M. Kamber, D.L. Collins, R. Shinghal, G.S. Francis, and A.C. Evans, “Model-based 3D segmentation of multiple sclerosis lesions in dual-echo MRI data,” in Proceedings of the Second Conference on Visualizationn in Biomedical Computing (R.A. Robb, ed.), vol. 1808, pp. 590–600, SPIE, 1992.

C.J. Henri, D.L. Collins, and T.M. Peters, “Reconstruction of 3-D branching structures,” in Proceedings of the Annual symposium on Information Processing in Medical Imaging (IPMI) (A.C.F. Colchester and D.J. Hawkes, eds.) Heidelberg: Springer, 1991.

A.C. Evans, W. Dai, D.L. Collins, P. Neelin, and T. Marrett, “Warping of a computerized 3-D atlas to match brain image volumes for quantitative neuroanatomical and functional analysis,” in Proceedings of the International Society of Optical Engineering: Medical Imaging V, vol. 1445, (San Jose, California), pp. 236–246, SPIE, 27 February-1 March 1991.
(pdf)

A.C. Evans, P. Neelin, S. Marrett, E. Meyer, W. Dai, and D.L. Collins, “Combined stereotactic mapping of MRI and PET studies of cognitive activation in human brain,” IEEE Transactions on Engineering in Medicine and Biology, vol. 13, no. 1, pp. 224–226, 1991.

C.J. Henri, G.B. Pike, D.L. Collins, and T.M. Peters, “Three-dimensional display of cortical anatomy and vasculature: MR angiography versus multi-modality integration,” in Proceedings of SPIE Medical Imaging, vol. 1232, pp. 172–182, SPIE, Feb. 4–5, 1990.
(pdf)

S. Marrett, A. Evans, D.L. Collins, and T. Peters, “Volume of interest (VOI) atlas for the analysis of neurophysiological image data,” in Proceedings of SPIE medical Imaging, (Newport Beach, California), pp. 467–477, SPIE, Jan. 29-Feb. 3, 1989.
(pdf)

A. Evans, S. Marrett, D.L. Collins, and T. Peters, “Anatomical-functional correlative analysis of the human brain using three dimensional imaging systems,” in Proceedings of SPIE Medical Imaging, vol. 1092, (Newport Beach, California), pp. 264–274, SPIE, Jan. 29-Feb. 3, 1989.

C. Henri, D.L. Collins, T. Peters, A. Evans, and S. Marrett, “Three-dimensional interactive display of medical images for stereotactic neurosurgery planning,” in Proceedings of SPIE Medical Imaging, vo. 1092, (Newport Beach, California), pp. 67–74, SPIE, Jan. 31 – Feb. 3, 1989.
(pdf)


Abstracts and conference presentations (since 2004, from 241 total)

2017

2016

Ryan Sanford, Regionally Specific Cortical Thinning in HIV+ Patients in the cART Era, 2016 Conference on Retroviruses and Opportunistic Infections (CROI), February 2016, Boston, Massachusetts

Fonov VS, Dadar M, Yiming X, Collins DL. MRI patch-based imaging biomarker for automatic detection of Parkinson’s Disease. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association. 2016 Jul 1;12(7):P1088-9.

Binette AP, Vogel JW, Fonov VS, Tremblay-Mercier J, Madjar C, Breitner JC, Collins DL, Poirier J, Villeneuve S, PREVENT-AD Research Group. High CSF tau is related to reduced hippocampal volume and subjective cognitive decline in healthy elderly with amyloid pathology. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association. 2016 Jul 1;7(12):P102-3.

Potvin O, Zandifar A, Fonov VS, Collins DL, Duchesne S. Baseline discrepancies in MRI patch-based appearance predictive of future decline in cognitively healthy ADNI participants. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association. 2016 Jul 1;12(7):P112.

Potvin O, Zandifar A, Fonov VS, Collins L, Duchesne S. Relative risk ratio for MRI patch-based appearance metric for future decline in cognitively healthy ADNI participants. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association. 2016 Jul 1;12(7):P525-6.

Hanganu A, Houde JC, Fonov VS, Degroot C, Mejia-Constain B, Lafontaine AL, Soland V, Chouinard S, Collins DL, Descoteaux M, Monchi O. Mild cognitive impairment is linked with white matter degeneration in the cortico-subcortical tracts in patients with Parkinson’s disease. Movement Disorders. 2016 Jun 1;31:S473-4.

De Leener B, Taso M, Fonov V, Le Troter A, Stikov N, Collins DL, Callot V, Cohen-Adad J. Fully-integrated T1, T2, T2*, white and gray matter atlases of the spinal cord. InProceedings of the 24th Annual Meeting of International Society for Magnetic Resonance in Medicine 2016 (pp. 7-13).

 

2015

R. Giraud, V. Ta, N. Papadakis, D.L. Collins, P. Coupé. (2015, September). Optimisation de l’algorithme PatchMatch pour la segmentation de structures anatomiques. XXVe Colloque GRETSI – Traitement du Signal et des Images Lyon. Lyon, France. (ID160).

Barlow-Krelina, E., Lysenko, M., Akbar, N., Aubert-Broche, B., Collins, D.L., Yeh, E.A., Banwell, B. & Till, C. (2015, August). Physical activity in patients with pediatric-onset multiple sclerosis: Associations with brain volume and cognitive efficiency. American Psychological Association Convention. Toronto, ON, Canada.

Y. Zeighami, M. Ulla, *M. Dadar, Y. Iturria-Medina, K. Larcher, A. C. Evans, D. L. Collins, A. Dagher. (2015 June). Parkinson’s disease Targets an Intrinsic Brain Network. Organization for Human Brain Mapping (OHBM). Honolulu, Hawaii, USA. (abstract)

Barlow-Krelina, E., Lysenko, M., Akbar, N., Aubert-Broche, B., Collins, D.L., Yeh, E.A., Banwell, B. & Till, C. (2015, June). Neuropsychological assessment in pediatric-onset multiple sclerosis patients: Sensititivy of hand dexterity to TI and T2 lesion volume. Jean Piaget Society Conference. Toronto, ON. (abstract)

Barlow-Krelina, E., Yeh, E.A., Lysenko, M., Akbar, N., Aubert-Broche, B., Collins, D.L., Banwell, B. & Till, C. (2015, June). The role of physical activity on brain volume and cognitive efficiency in pediatric-onset multiple sclerosis: Comparing strenuous and moderate activity. Canadian Psychological Association Convention. Ottawa, ON, Canada.

De Leener, B., Roux, A., Touati, J., Levy, S., Taso, M., Fonov, V., Collins, D.L., Callot, V. & Cohen-Adad, J. (2015, April). Template-based analysis of multi-parametric MRI data with the Spinal Cord Toolbox. International Society for Magnetic Resonance in Medicine (ISMRM). Toronto, ON, Canada. (abstract)

Nakamura, K., Fonov, V.S., Guizard, N., Narayanan, S., Arnold, D.L. & Collins, D.L. (2015, April). Extending BrainWeb for Evaluating Methods of Brain Volume Change: Simulation of Central and Peripheral Brain Atrophy. International Society for Magnetic Resonance in Medicine (ISMRM). Toronto, ON, Canada. (abstract)

Barlow-Krelina, E., Lysenko, M., Akbar, N., Aubert-Broche, B., Collins, D.L., Yeh, E.A., Banwell, B. & Till, C. (2015, April). Neuropsychological assessment in pediatric-onset multiple sclerosis patients: Sensititivy of hand dexterity to TI and T2 lesion volume. Neuroinflammation Symposium. Toronto, ON.

Moreno, D.A., Jesson, A., Subbanna, N., Karimaghaloo, Z., Arnold, L.D., Collins, D.L. & Arbel, T. (2015, April). Diffeomorphic Registration of Healthy Tissue Priors to Brain MRI for Pathology Segmentation. IEEE International Symposium on Biomedical Imaging: From Nano to Macro. NY, USA, IEEE: Submission Number: 581.

Hyung Kim, S., Fonov, V. Collins, D.L., Gerig, G., Styner, M.A. (2015, March). Shape index distribution based local surface complexity applied to the human cortex, Proc. SPIE 9413, Medical Imaging 2015: Image Processing, 941344. (abstract)

2014

Fonov, V. S., Weier, K., Aubert-Broche, B., Lavoie, K., Doyon, J., & Collins, D. L. (2014 June). Automatic analysis of cerebellar growth trajectories in normal child development. 20th Annual Meeting of the Organization for Human Brain Mapping (OHBM), Hamburg, Germany, Volume: 5

M. Kersten-Oertel, S. Drouin, I. Gerard, D. Sinclair, D. Sirhan, D. L. Collins. (2014, June). Augmented reality in the operating room: a proof of concept. Computer Assisted Radiology and Surgery (CARS) Conference, Fukuoka, Japan. (abstact)

B. Aubert-Broche, V. Fonov, K. Weier, B. Banwell, S. Narayanan, D.L. Arnold, D.L. Collins, the Canadian pediatric Demylinating Disease Network (2014, September). “Differential impact of pediatric monophasic demyelinating disorders and multiple sclerosis on brain growth”. Joint ACTRIMS-ECTRIMS Meeting, Boston, Massachusetts, USA, 20(1): 501–510. (abstract)

K. Weier, C. Till, V. Fonov, E.A. Yeh, D.L. Arnold, B. Banwell, D.L. Collins (2014, September). “The role of the cerebellum in cognitive test performance in children and adolescents with multiple sclerosis”. Joint ACTRIMS-ECTRIMS Meeting, Boston, Massachusetts, USA, 20(1): 67–284. (abstract)

V. S. Fonov A. Le Troter, M. Taso, G. Leveque, M. Benhamou, M. Sdika, D. L. Collins, V. Callot, J. Cohen-Adad. (2014, May). “MNI-Poly-AMU average anatomical template for automatic spinal cord measurements”. Joint Annual Meeting ISMRM-ESMRMB, Milan, Italy. (abstract)

K. Nakamura, N. Guizard, V. S. Fonov, S. Narayanan, D. L. Collins, D. L. Arnold (2014, May). “MRI-based Simulation of Central Brain Atrophy for Evaluation of Brain Atrophy Measurement Methods”. Joint Annual Meeting ISMRM-ESMRMB, Milan, Italy. (abstract)

H. Ghaderi, Y. Xiao, A. F. Sadikot, D. Louis Collins, G. Bruce Pike, “Multi-contrast unbiased non-linear brain atlas of Parkinson’s disease patients”, 2014 MICCAI workshop on the 2nd Deep Brain Stimulation Methodological Challenges (DBSMC 2014). (abstract)

Weier, K., Fonov, V., Aubert-Broche, B., Arnold, D., Banwell, B., & Collins, DL. (2014). Evidence Of Impaired Age-Expected Growth And Atrophy Of The Cerebellum In Pediatric Patients With Monophasic Acquired Demyelinating Syndrome And Multiple Sclerosis (S60. 001). Neurology, 82(10 Supplement), S60–001. (abstract)

Grover, S., Sye, A., Aubert-Broche, B., Banwell, B., Collins, DL., & Yeh, E. A. (2014). Downward Educational Trajectory Is Seen In Children And Young Adults After Diagnosis Of Pediatric MS (P2. 235). Neurology, 82(S10), P2–235. (abstract)

Pruessner, M., Lepage, M., Collins, DL., Joober, R., Pruessner, J. C., & Malla, A. K. (2014). Poster# S63 Reduced hippocampal volume in male but not female patients with first episode psychosis: relationship to cortisol levels and symptoms. Schizophrenia Research, 153(S1). (abstract)

Faridi, N., Karama, S., Burgaleta, M., Evans, A. C., Fonov, V., Collins, D. L., & Waber, D. P. (2014, March). Neuroanatomical Correlates of Working Memory in Children and Adolescents: Performance versus Behavioral Rating Measures. In Journal Of Neuropsychiatry And Clinical Neurosciences (Vol. 26, No. 2, pp. 2–2). 1000 Wilson Boulevard, Ste 1825, Arlington, Va 22209–3901 USA: Amer Psychiatric Publishing, Inc. (abstract)

Faridi, N., Karama, S., Burgaleta, M., White, M., Evans, A. C., Fonov, V., Collins, DL & Waber, D. P. (2014). Neuroanatomical Correlates of Behavioral Rating Versus Performance Measures of Working Memory in Typically Developing Children and Adolescents. American Psychological Association. (abstract)

Gerard, I. J., Hall, J. A., Mok, K., & Collins, D. L. (2014, August). Repeated landmark use for patient-to-image registration reduces fiducial registration error in patient-to-image mapping in image guided neurosurgery. In Medical Physics (Vol. 41, No. 8, pp. 4–4). Ste 1 No 1, 2 Huntington Quadrangle, Melville, Ny 11747–4502 USA: Amer Assoc Physicists Medicine Amer Inst Physics. (abstract)

Lafaille-Magnan, M. E., Collins, DL., Fonov, V., Fontaine, D., Etienne, P., Poirier, J., & Breitner, J. (2014). Association of olfactory performance and hippocampal volume in persons at risk of alzheimer’s dementia. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association, 10(4), P85-P86. (abstract)

Zandifar, A., Fonov, V., Coupé, P., Pruessner, J. C., & Collins, D. L. (2014). A unified assessment of fully automated hippocampus segmentation methods. Alzheimer’s Association International Conference on Alzheimer’s Disease, AAIC, Copenhagen, Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association, 10(4), P86. (abstract)

2013

Marc Benhamou, Vladimir Fonov, Manuel Taso, Arnaud Le Troter, Michaël Sdika, Louis Collins, Virginie Callot, Julien Cohen-Adad. “Atlas of white-matter tracts in the human spinal cord” Paper presented at the International Society for Magnetic Resonance in Medicine (ISMRM), Salt Lake City, USA, April 20–26, 2013. (abstract)

Nicolas Guizard, Kunio Nakamura, Pierrick Coupé, Douglas L. Arnold, D. Louis Collins (2013, December). “Non-local MS MRI lesion inpainting method for image processing”, endMS conference, Saint-Sauveur, Canada.

Kunio Nakamura, Nicolas Guizard, Vladimir S. Fonov, Sridar Narayanan, D. Louis Collins, Douglas L. Arnold (2013, December). “Evaluation of Brain atrophy measurements methods: an MRI simulation study”, endMS conference, Saint-Sauveur, Canada (Best paper award)

Katrin Weier, Vladimir Fonov, Bérengère Aubert‐Broche, Doug L. Arnold, Brenda Banwell, D. Louis Collins (2013, December). “Monophasic Acquired Demyelinating Syndrome and onset of Multiple Sclerosis in childhood leads to impaired age‐expected growth and atrophy of the cerebellum”, endMS conference, Saint-Sauveur, Canada

Derakhshan, M., G. Leonard, D. Araujo, D. L. Collins, D. L. Arnold, and S. Narayanan. “Hippocampal Magentization Transfer Ratio and Not Hippocampal Atrophy Best Explains Memory Dysfunction in Patients with Multiple Sclerosis.” Paper presented at the International Society for Magnetic Resonance in Medicine (ISMRM), Salt Lake City, USA, April 20–26, 2013 (abstract)

Vladimir S. Fonov, Julian Cohen-Adad, D. L. Collins. “Spinal cord template and a semi-automatic image prcessing pipeline.” Paper presented at the International Society for Magnetic Resonance in Medicine (ISMRM), Salt Lake City, USA, April 20–26, 2013. (abstract)

2012

L. Bailey, Y Xiao, M.M. Chakravarty, A.F. Sadikot and D.L. Collins, “Assessment of atlas warping of small basal ganglia on Colin 27”. International Society for Magnetic Resonance in Medicine (ISMRM) Conference, Melbourne, Australia, May 5–11, 2012.

Aubert-Broche, B., Fonov, V., Guizard, N., Banwell, B., Narayanan, S., Arnold, D. L., & Collins, D. L. (2012, October). Brain growth rate is reduced in paediatric-onset multiple sclerosis. 28th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), In Multiple Sclerosis Journal (vol Vol. 18, pp. 299–300). 1 Olivers Yard, 55 City Road, London EC1Y 1SP, England: Sage Publications ltd.

B. Aubert-Broche, V. Fonov, N. Guizard, B. Banwell, S. Narayanan, D.L. Arnold, D.L. Collins on behalf of the Canadian Pediatric Demyelinating Disease Network; “Brain growth rate is reduced in paediatric-onset multiple sclerosis”, 28th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), Lyon, France, September 9–12, 2012. (abstract)

S. J. S. Chen, M. Kersten-Oertel, S. Drouin, and D. L. Collins. “Visualizing the path of blood flow for image guided surgery of cerebral arteriovenous malformations”. SPIE Medical Imaging, San Diego, CA, Feb 4–9, 2012.

Pierrick Coupé, José V. Manjón, Vladimir Fonov , Simon F. Eskildsen, D. Louis Collins. Patch-Based Morphometry: Application to Alzheimer’s Disease, Alzheimer’s Association International Conference on Alzheimer’s Disease, AAIC, Vancouver, 2012. (abstract)

M. Derakhshan, S. Narayanan, D.L. Collins and D.L. Arnold, “Combining SIENA and SIENAx for improved quantification of grey and white matter atrophy.” International Society for Magnetic Resonance in Medicine (ISMRM) Conference, p. 2210, Melbourne, Australia, May 5–11, 2012. (abstract)

Elliott, C., Maranzano, J., Cadavid, D., Richert, N., Duda, P., Fisher, E., Narayanan, S, Collins, DL, Arbel, T, Arnold, D. L. (2012, October). Inter-rater variability of new T2 determination in the clinic has implications for MS diagnosis and monitoring. 28th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), In Multiple Sclerosis Journal (vol. 18, pp. 395–396). 1 Olivers Yard, 55 City Road, London EC1Y 1SP, England: Sage Publications ltd. (abstract)

S.F. Eskildsen, J. V. Manjón, P. Coupé, V. Fonov, and D. L. Collins. Superresolution improves MRI cortical segmentation with FACE, Organization for Human Brain Mapping, 18th Annual Meeting, Beijing, 2012. (abstract)

Simon Eskildsen, Vladimir Fonov, Pierrick Coupe, D. L. Collins. Visualizing Stages of Cortical Atrophy in Progressive MCI From the ADNI Cohort, Alzheimer’s Association International Conference on Alzheimer’s Disease, AAIC, Vancouver, 2012. (abstract)

V. S. Fonov, P. Coupé, M. Styner, D. L. Collins. Automatic lateral ventricle segmentation in infant population with high risk of autism. Organization for Human Brain Mapping, 2012. (abstract)

C. Haegelen, V. Fonov, F. Lalys, J-Y Gauvrit, P. Jannin, D.L. Collins and X. Morandi, “Analyse de la distorsion induite par le cadre de stéréotaxie en IRM 3Tesla.” Submitted to the Société Française de Neurochirurgie, Toulouse, France, May 2–12, 2012.

M. Kersten-Oertel, S. J. S. Chen, D. L. Collins. “A Comparison of Depth Enhancing Perceptual Cues for Vessel Visualization in Neurosurgery.” CARS, June 27–30, 2012. (abstract)

Le Jeune, Florence, Simon Eskildsen, Gabriel Robert, Dominique Drapier, Thibaut Dondaine, Paul Sauleau, Florent Lalys, Claire Haegelen, D. Louis Collins, and Marc Verin. “Metabolic and structural correlates of apathy induced by subthalamic stimulation.” In Society of Nuclear Medicine Annual Meeting Abstracts, vol. 53, no. Supplement 1, p. 1947. 2012. (abstract)

J. V. Manjón, P. Coupé, L. Concha, A. Buades, D. L. Collins, M. Robles. DWI denoising using overcomplete Local PCA Decomposition. ISMRM 2012, Melbourne, 2012. (abstract)

Sonkin, M and Rocca, MA and Pagani, E and Copetti, M and Absinta, M and Banwell, B and Sled, JG and Arnold, DL and Narayanan, S and Collins, DL et al. “Diffusion tensor imaging evidence of abnormal white matter integrity in very early onset paediatric MS.” 28th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), In Multiple Sclerosis Journal (vol. 18, pp. 167–168). 1 Olivers Yard, 55 City Road, London EC1Y 1SP, England: Sage Publications ltd. (abstract)

Y. Xiao, L. Bailey, M.M. Chakravarty, S. Bereault, A.F. Sadikot, G.B. Pike and D.L. Collins, “Comparing two atlas-based automatic segmentation methods for subthalamic nucleus deep brain stimulation”. International Society for Magnetic Resonance in Medicine (ISMRM) Conference, Melbourne, Australia, May 5–11, 2012. (abstract)

Y. Xiao, L. Bailey, S. Bereault, A.F. Sadikot, G.B. Pike and D.L. Collins, “Validation of T1-weighted inter-subject MRI registration technique for atlas warping in identifying the subthalamic nucleus, red nucleus and substantia nigra”. International Society for Magnetic Resonance in Medicine (ISMRM) Conference, Melbourne, Australia, May 5–11, 2012. (abstract)

Yan, C. X. B., Goulet, B., Chen, S. J. S., Tampieri, D., & Collins, D. L. (2012). Validation of ultrasound-CT registration across multiple porcine vertebrae. Journal of Bone & Joint Surgery, British Volume,94(SUPP XLIV), 43–43. (abstract)

2011

J. Ansado, D.L. Collins, O. Monchi, V. Fonov, S. Joubert, F. Tomaiuolo, M. Petrides and Y. Joanette. “Interhemispheric efficiency in healthy aging, mild cognitive impairmentand Alzheimer’s disease.” 17th Annual Meeting of OHBM (Organization for Human Brain Mapping), Quebec City, June 26–30, 2011.

M. Mallar Chakravarty, Rebecca C. Calcott, D. Louis Collins, and Jason P. Lerch. Automatically generated template libraries improve multi-atlas based segmentation of subcortical structures. Organization for Human Brain Mapping 2011. Quebec City, Canada

M. Mallar Chakravarty, Armin Raznahan, Jay N. Giedd, Judith Rapoport, D. Louis Collins, Jason P. Lerch, Nitin Gogtay. Surface deformation-based analysis of subcortical structures in childhood-onset schizophrenia. Organization for Human Brain Mapping 2011. Quebec City, Canada

Coulon O, Fonov V, Collins DL, Atlas-based Clustering of Sucal Patterns – Application to the Left Inferior Frontal Sulcus, Human Brain Mapping, Québec, Canada, 2011

Pierrick Coupé, Vladimir Fonov, Simon F. Eskildsen, José V. Manjón, Douglas L. Arnold, D. Louis Collins: Influence of the Training Library Composition on a Patch-based label fusion method: Application to Hippocampus Segmentation on the ADNI dataset, Alzheimer’s Association International Conference on Alzheimer’s Disease, ICAD, Paris, 2011.

M. Derakhshan, C. Griffiths, D. Araujo, S. Narayanan, D.L. Collins, G. Leonard and D.L. Arnold. “Global and Regional Cortical Thickness Correlates of Cognitive Function in Cognitively Impaired Patients with Multiple Sclerosis”. American Academy of Neurology, (Honolulu, USA) April 9–16, 2011, p. 410AAN11D1.

S.F. Eskildsen, P. Coupé, V. Fonov, L.R. Østergaard and D. L. Collins: Effect of non-local means denoising on cortical segmentation accuracy with FACE, Organization for Human Brain Mapping, 17th Annual Meeting, Quebec City, 2011.

S.F. Eskildsen, V. Fonov, P. Coupé, L.R. Østergaard, D. L. Collins: Prediction of MCI converters in the ADNI cohort using patterns of cortical thinning, Alzheimer’s Association International Conference on Alzheimer’s Disease, AAIC, Paris, 2011.

S.F. Eskildsen, V. Fonov, P. Coupé, L.R. Østergaard, D. L. Collins. Prediction of Alzheimer’s disease in subjects with mild cognitive impairment using structural patterns of cortical thinning. 15th Nordic – Baltic Conference on Biomedical Engineering and Medical Physics, Volume 34, pages 156–159, 2011.

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Conference on Alzheimer’s Disease, ICAD, Paris, 2011.

N. Guizard, P. Coupé, V.Fonov, D. L. Arnold and D.L. Collins. “Robust fusion of Jacobian maps for Deformation-Based Morphometry.” 17th Annual Meeting of OHBM (Organization for Human Brain Mapping), Quebec City, June 26–30, 2011.

N. Guizard, M. Verin, V. Fonov, D.L. Arnold and D.L. Collins. “4D non-linear registration for longitudinal analyses of ventricle enlargement in RRMS patients.” Triennial Congress of the European and Americas Committees for Treatment and Research in Multiple Sclerosis (EXTRIMS/ACTRIMS), Amsterdam, October 19–22, 2011.

C. Hagaelen, V. Fonov, P. Coupé, F. Lalys, P. Jannin, X. Morandi and D.L. Collins. “Validation de la segmentation des ganglions de la base d’un template Parkinson.” Congrès de la Société Française de Neurochirugie, Dijon, France, April 6–8, 2011,

C. Haegelen, P. Perucca, L. Andrage-Valença, C-E Châtillon, R. Zelmann, F. Dubeau, A. Olivier, D.L. Collins and J. Gotman. “Correlation between High-Frequency Oscillations, Surgical Outcome and Extent of Surgical Resection in Patients with Medically Refractory Epilepsy.” Submitted for the American Epilepsy Society Meeting, Baltimore MD, December 2–6, 2011, June 15, 2011.

C. Haegelen, N. Guizard, P. Coupé, P. Jannin, X. Morandi, D. L. Collins. Validation of basal ganglia segmentation on a 3T MRI template. Organization for Human Brain Mapping’11, 2011.

M. Kersten-Oertel, S. J. S. Chen, D. L. Collins. “Enhancing depth perception of volume-rendered angiography data”.VIS 2011 Poster Session, Providence, RI, Oct. 23–38, 2011

Kim, S., V. Fonov, J. Piven, J. Gilmore, C. Vachet, G. Gerig, D. Collins and M. Styner (2011). Spatial intensity prior correction for tissue segmentation in the developing human brain. IEEE International Symposium on Biomedical Imaging: From Nano to Macro. Chicago,USA, IEEE: 2049- 52.

J.V. Manjon, P. Coupé and D.L. Collins. “MRI Denoising based on Sparseness and Self-similarity.” 17th Annual Meeting of OHBM (Organization for Human Brain Mapping), Quebec City, June 26–30, 2011.

Till Sprenger, Christian L. Seifert, Michael Valet, Anna P. Andreou, Annette Foerschler, Claus Zimmer, D. Louis Collins, Peter J Goadsby, Thomas R. Tölle, and M. Mallar Chakravarty. Assessing the risk of thalamic post-stroke pain by MRI lesion mapping. Congress of the European Federation IASP Chapters 2011. Hamburg, Germany

Yan CXB, Goulet B, Chen SJS, Tampieri D, Collins DL. Validation of Ultrasound-CT Registration across Multiple Porcine Vertebrae. In: Davies B, Joskowicz L and Cobb JP, editors. Proceedings of the 11th Annual Meeting on the Computer Assisted Orthopaedic Surgery (CAOS); 2011 June 15–18; London, UK

2010

Lara Bailey, Stephen Frey, Christopher Cocosco, M. Mallar Chakravarty, and D. Louis Collins. Improved Java Internet Viewer: A web-based tool for 3D medical image data visualization and comparison. Organization for Human Brain Mapping, 2010. Barcelona, Spain.

Z. Caramanos, V.S. Fonov, J.T. Chen, S.J. Francis, A. Carmel-Veilleus, S. Narayanan, D.L. Collins, and D.L. Arnold. “Fully-automated MRI quantification of lateral-ventricle volume and volume-change in patients with Alzheimer’s disease.” International Society for Magnetic Resonance in Medicine and the European Institute for Biomedical Imaging Research Meeting, Stockholm, Sweden, May 1–7, 2010.

Z. Caramanos, V. Fonov, S.J. Francis, D.L. Collins, S. Narayanan and D.L. Arnold. “ Effects of actual and simulated Z-shifts on T2-lesion volumes in patients with multiple sclerosis (4–5-A).” McGill University Integrated Program in Neuroscience Retreat 2010 Abstract Booklet, 33, 2010

D.L. Collins, V. Fonov, and S. Duchesne. “MRI shape analysis predicts progression from mild cognitive impairment to Alzheimer’s disease”. International Society for Magnetic Resonance in Medicine and the European Institute for Biomedical Imaging Research Meeting, Stockholm, Sweden, May 1–7, 2010.

D.L. Collins and V. Fonov (2010). Robust automatic segmentation of hippocampus differentiates normal aging from Alzheimer’s dementia in the ADNI cohort. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association. Honolulu, USA. 6: S15-S15.

D.L. Collins and V. Fonov (2010). Automatic Anatomical Structure Segmentation Predicts Conversion from MCI to Alzheimer’s Disease. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association. Honolulu, USA. 6: S25-S25.

P. Coupé, V. Fonov, J. V. Manjon, D. L. Collins. Template Construction using a Patch-based Robust Estimator. Organization for Human Brain Mapping’10, 2010

M. Derakhshan, Z. Caramanos, S. Narayanan, D.L. Arnold and D.L. Collins. “Surface-based techniques reveal regions of reduced cortical magnetization transfer ratio in patients with MS”. International Society for Magnetic Resonance in Medicine and the European Institute for Biomedical Imaging Research Meeting, Stockholm, Sweden, May 1–7, 2010.

M. Derakhshan, S. Narayanan, J.T. Chen, P.S. Giacomini, D.L. Arnold and D.L. Collins. “ ‘Pseudo-T2’ relaxation times using a dual turbo spin-echo sequence: methodology and validation”. 16th Annual Meeting of OHBM (Organization for Human Brain Mapping), Barcelona, June 6–10, 2010.

V. Fonov, S. Narayanan, D.L. Arnold, and D.L. Collins. “Lateral ventricle segmentation based on fusion of expert priors in AD”. International Society for Magnetic Resonance in Medicine and the European Institute for Biomedical Imaging Research Meeting, Stockholm, Sweden, May 1–7, 2010.

Fonov, V., D. L. Arnold and D. L. Collins (2010). Robust automatic segmentation and characterization of lateral ventricle size in the ADNI cohort. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association. Honolulu, USA. 6: S15-S15.

Haegelen, Claire and Lalys, Florent and Jannin, Pierre and Abadie, Alexandre and Collins, DL and Brassier, Gilles and Morandi, Xavier (2010). “Validation de la segmentation des ganglions de la base sur un template IRM 3 Tesla”, Neurochirurgie 56(6):543–4.

L. Mercier, R.F. Del Maestro, K. Petrecca and D.L. Collins. “ Experience using intraoperative 3D ultrasound in 14 brain tumors cases”, Canadian Neuro-Oncology Meeting, Niagara-on-the-Lake, Canada (2010)

L. Mercier, R.F. Del Maestro, K. Petrecca and D.L. Collins. “Experience using intraoperative 3D ultrasound in conjunction with preoperative MRI in brain tumor surgery”. Society of Neuro-Oncology Meeting, Montreal, November 18–21, 2010.

Abbas F. Sadikot, M. Mallar Chakravarty, Gilles Bertrand, Vladimir Rymar, Vladimir Fonov, Fahd Al-Subaie, Sanjay Mongia, Michel Panisset, D. Louis Collins. Creation of a computerized MRI-integrated high-resolution volumetric atlas of the basal ganglia and thalamus. International Basal Ganglia Society, 2010. Long Branch, New Jersey, USA

Simmons, Andrew and Westman, Eric and Zhang, Yi and Muehlboeck, J and Tunnard, Catherine and Collins, D Louis and Evans, Alan and Mecocci, Patrizia and Vellas, Bruno and Tsolaki, Magda. “Multivariate Analysis of MRI Data to Discriminate between Groups and Predict Conversion in Alzheimer’s Disease”, Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association. Honolulu, USA. 6($):s36.

C.L. Tardif, J.B. Richardson, C. Lepage, D.L. Collins, A.C. Evans and G.B. Pike. “Profile-based cortical parcellation for detection of cortical multiple sclerosis lesions”. International Society for Magnetic Resonance in Medicine and the European Institute for Biomedical Imaging Research Meeting, Stockholm, Sweden, May 1–7, 2010.

E. Westman, A. Simmons, Y. Zhang, J-S. Muehlboeck, F. Gwadry-Sridhar, S. F. Eskildsen, P. Julin, N. Sjogren, D. L. Collins, A. Evans, P. Mecocci, B. Vellas, M. Tsolaki, I. Kłoszewska, H. Soininen, S. Lovestone, C. Spenger and L-O. Wahlund for the AddNeuroMed consortium: Combining two large MRI data sets (AddNeuroMed and ADNI) using multivariate data analysis to distinguish between patients with Alzheimer’s disease and healthy controls, Alzheimer’s Association International Conference on Alzheimer’s Disease, ICAD, Honolulu, 2010.

2009

Caramanos, Z., V. Fonov, S.J. Francis, S. Narayanan, D.L. Collins, and D.L. Arnold. (2009). The effect of head positioning and repositioning on SIENA-generated measures of brain volume change: Results from actual Z-shifts. Alzheimer’s & Dementia, 5(4, Suppl. 1), P266.

Caramanos, Z., V. Fonov, S.J. Francis, S. Narayanan, D.L. Collins, and D.L. Arnold. (2009). The effect of head positioning and repositioning on SIENA-generated measures of brain volume change: Results from simulated Z-shifts. Alzheimer’s & Dementia, 5(4, Suppl. 1), P266–7.

Caramanos, Z., V. Fonov, S.J. Francis, S. Narayanan, D.L. Collins, and D.L. Arnold. (2009). The effect of head positioning and repositioning on SIENA-generated measures of brain volume change: Results from actual Z-shifts. Alzheimer’s & Dementia, 5(4, Suppl. 1), P54.

Caramanos, Z., V. Fonov, S.J. Francis, S. Narayanan, D.L. Collins, and D.L. Arnold. (2009). The effect of head positioning and repositioning on SIENA-generated measures of brain volume change: Results from simulated Z-shifts. Alzheimer’s & Dementia, 5(4, Suppl. 1), P55.

Caramanos, Z., V. Fonov, A. Carmel-Veilleux, S. Narayanan, D.L. Collins, and D.L. Arnold, “Misalignment of the head with magnet isocenter: Impact of associated gradient distortions on measurement of T2-weighted cerebral lesion volumes in magnetic resonance imaging studies of patients with MS,” 25th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), Düsseldorf, Germany, Multiple Sclerosis, 15(Suppl. 9), S102, September 9–12, 2009.

Caramanos, Z., V. Fonov, M. Derakhshan, D.L. Collins, S. Narayanan, and D.L. Arnold. Effects of actual and simulated Z-shifts on FreeSurfer-segmented whole-brain-tissue, hippocampal, and lateral-ventricle volumes. 2009 McGill Biomedical Engineering Student’s Society Research Day

DL Collins, JC Pruessner, “Accurate registration-based segmentation of hippocampus and amygdala”, in 15th Annual Meeting, Organization for Human Brain Mapping, San Francisco, CA, June 18–23, 2009.

D.L. Collins, J. Maranzano, T Li, D.L. Arnold, “Robust automatic segmentation of hippocampus from multisite MRI data,” in Alzheimer’s Association 2009 International Conference on Alzheimer’s Disease (ICAD), (Vienna, Austria), July 11–16, 2009. abstract 962.

P. Coupé, J.V. Manjon, E. Gedamu, D. Arnold, M. Robles, and D.L. Collins, “Object-based Rician Noise Estimation for MR Images,” in 15th Annual Meeting, Organization for Human Brain Mapping, San Francisco, CA, June 18–23, 2009. abstract 1509.

P. Coupé, J.V. Manjon, M. Robles, and D.L. Collins, “Adaptive Multiresolution Denoising Filter for 3D MR Images,” 15th Annual Meeting, Organization for Human Brain Mapping, San Francisco, CA, June 18–23, 2009.

Derakhshan, M., Z. Caramanos, S. Narayanan, D.L. Collins, and D.L. Arnold. (2009). Regions of reduced cortical magnetization transfer ratio detected in MS patients using surface-based techniques. Proceedings of the International Society for Magnetic Resonance in Medicine, 14, 338

Derakhshan, M., Z. Caramanos, S. Narayanan, P.S. Giacomini, J. Maranzano, T. Li, S. J. Francis, D. L. Arnold, and D. L. Collins. “An Evaluation of Automatic Techniques for the Quantification of Grey Matter Atrophy in Multiple Sclerosis.” Paper presented at the Medical Image Analysis and Acquisition in Multiple Sclerosis (MIAMS) workshop at Medical Image Computing and Computer-Assisted Interventation (MICCAI), London, England, September 20–24, 2009

Fonov, V., A. Evans, R. McKinstry, C. Almli and D.L. Collins (2009). Unbiased nonlinear average age-appropriate brain templates from birth to adulthood. Annual Meeting of the Organization for Human Brain Mapping. San-Francisco, USA.

Fonov, V., I. Lepopert, G. Pike and D. L. Collins (2009). Voxel-wise T2 relaxometry of Normal Pediatric Brain Development. Annual Meeting of the Organization for Human Brain Mapping. San- Francisco, USA.

Stephen Frey, Deepak N. Pandya, M. Mallar Chakravarty, Michael Petrides, D. Louis Collins. MNI monkey space. The Japanese Neuroscience Society, 2009. Honshu, Japan.

Ghassemi, R., S. Narayanan, V. Fonov, Z. Caramanos, P.S. Giacomini, S.J. Francis, D.L. Collins, A. Bar-Or, A.D. Sadovnick, B. Banwell, and D.L. Arnold, on behalf of the Canadian Pediatric Demyelinating Disease Study Group. (2009). Children with acute demyelinating syndromes exhibit age-dependent slowing of brain growth compared to healthy children. Neurology, 72(11, Suppl 3), A435

Ghassemi, R., S. Narayanan, V. Fonov, Z. Caramanos, P.S. Giacomini, S.J. Francis, D.L. Collins, A. Bar-Or, A.D. Sadovnick, B. Banwell, and D.L. Arnold, on behalf of the Canadian Pediatric Demyelinating Disease Study Group. (2009). Children with acute demyelinating syndromes exhibit age-dependent slowing of brain growth compared to healthy children. Proceedings of the 4th Annual Symposium of the CIHR Training Program in Neuroinflammation, 18

P. Giacomini, B. Aubert-Broche, R. Ghassemi, V. Fonov, S. Narayanan, D.L. Collins, D. Sadovnick, A. Bar-Or, B. Banwell, and D.L. Arnold on behalf of the Canadian Pediatric Demyelinating Network, “Thalamic atrophy following acute demyelination in children”, Multiple Sclerosis, 15(9):S2013 (2009)

P. Giacomini, B. Aubert-Broche, R. Ghassemi, V. Fonov, S. Narayanan, D.L. Collins, D. Sadovnick, A. Bar-Or, B. Banwell, and D.L. Arnold on behalf of the Canadian Pediatric Demyelinating Network, “ Thalamic atrophy is associated with brain white matter lesions in children with acquired demyelinating syndromes,” 25th Congress of the European Committee for Treatment and Research in Multiple Sclerosis (ECTRIMS), Düsseldorf, Germany, September 9–12, 2009.

J.V. Manjon, P. Coupé, L. Marti-Bonmati, D.L. Collins and M. Robles, “Spatially Adaptive Nonlocal MRI Denoising,” 15th Annual Meeting, Organization for Human Brain Mapping, San Francisco, CA, June 18–23, 2009.

Yan CXB, Goulet B, Pelletier J, Tampieri D, Collins DL. Ultrasound to CT registration of vertebral bones. In: Davies B, Joskowicz L and Murphy S, editors. Proceedings of the 9th Annual Meeting on the Computer Assisted Orthopaedic Surgery (CAOS); 2009 June 17–20; Boston, MA, USA; p. 621–624

T. Sprenger, M. Chakravarty, C. Seifert, M. Valet, A. Foerschler, C. Zimmer, D.L. Collins, T.R. Tölle, “Läsionsmapping bei Patienten mit Thalamusschmerzen” Mechanismen und Therapie, Prädiktion und Prävention von chronischen Kopfschmerzen: Kongress der Deutschen Gesellschaft für Neurologie mit Fortbildungsakademie, Nürnberg, Germany, September 23–26, 2009

2008

B. Aubert-Broche, C. Grova, GB Pike, D.L. Collins. “Quantification of whole brain T1 and T2 relaxation times – Automated grouping of similar regions to define cortical areas,” in proceedings of the 16th Scientific Meeting of the International Society for Magnetic Resonance in Medicine, p. 1524, Toronto, May 3–9, 2008

Caramanos, Z., V. Fonov, S.J. Francis, S. Narayanan, D.L. Collins, and D.L. Arnold. (2008). Effects of Z-shift-associated gradient-distortions on SIENA-generated measures of brain atrophy. Proceedings of the “MIAMS’08 workshop on “Medical Image Analysis on Multiple Sclerosis (validation and methodological issues)” at MICCAI 2008, the 11th International Conference on Medical Image Computing and Computer Assisted Intervention.

Caramanos, Z., V. Fonov, S.J. Francis, D.L. Collins, S. Narayanan, and D.L. Arnold. (2008). Effects of actual and simulated Z-shifts on T2-lesion volumes in patients with MS. Multiple Sclerosis, 14(Suppl. 1), S98-S99.

Caramanos, Z., V. Fonov, M. Derakhshan, D.L. Collins, S. Narayanan, and D.L. Arnold. (2008). Z-shift effects on segmented brain-tissue volumes. Multiple Sclerosis, 14(Suppl. 1), S99.

Caramanos, Z., V. Fonov, M. Derakhshan, D.L. Collins, S. Narayanan, and D.L. Arnold. (2008). Effects of actual and simulated Z-shifts on FreeSurfer-segmented whole-brain-tissue, hippocampal, and lateral-ventricle volumes. Alzheimer’s & Dementia, 14(4, Suppl. 2), T276-T277.

Caramanos, Z., V. Fonov, M. Derakhshan, D.L. Collins, S. Narayanan, and D.L. Arnold. (2008). Effects of actual and simulated Z-shifts on FreeSurfer-segmented whole-brain-tissue, hippocampal, and lateral-ventricle volumes. Alzheimer’s & Dementia, 14(4, Suppl. 2), T41.

Chen, J.T., Collins, D.L., Derakhshan, M., and Arnold, D.L.: Quantifying MRI with increased specificity for MS pathology: A longitudinal method for obtaining whole- brain metrics of 3D maps derived from non-conventional MRI. The International Society for Magnetic Resonance in Medicine Sixteenth Scientific Meeting and Exhibition (Proceedings of the International Society for Magnetic Resonance in Medicine Sixteenth Scientific Meeting and Exhibition. 16: 2136.) Toronto, Ontario, Canada. 2008

D. L. Collins, J. Maranzano, T. Li, and D.L. Arnold, “Towards robust automatic segmentation of hippocampus from multisite MRI data,” in Alzheimer’s Disease NeuroImaging Initiative (ADNI) Investigators’ Meeting, April 26, 2009, Seattle.

Lecoeur, J., Morrissey, S. P., Ferré, J. C., Arnold, D. L., Collins, D. L., & Barillot, C. (2008). Multiple sclerosis lesions segmentation using spectral gradient and graph cuts. In Medical Image Analysis on Multiple Sclerosis (validation and methodological issues).

Li, W., Kornak, J., Li, C., Koyama, A., Saeed, I., Lu, Y., … & Harris, T. (2008). Imaging the Spatial Distribution of Proximal Femoral Response to One Year of Teriparatide Therapy: The OPTAMISE Study. Journal of Bone and Mineral Research (JBMR), 23, S461.

Panet-Raymond, V., P.S. Giacomini, M. Derakhshan, A. Fiocco, D. L. Collins, L. Souhami, D. L. Arnold, and G. Shenouda. “Differential Regional Brain Atrophy Following Prophylactic Cranial Irradiation in Small Cell Lung Cancer Patients.” Paper presented at the 50th Annual Meeting of the American Society for Therapeutic Radiology and Oncology, Boston, USA, Sept 21–25, 2008

Panet-Raymond, V., P.S. Giacomini, R. DelCarpio, M. Derakhshan, A. Fiocco, D. L. Collins, D. L. Arnold, L. Souhami, and G. Shenouda. “Ventricular Enlargement and Brain Colume Changes Post Prophylactic Cranial Irradiation in Small Cell Lung Cancer Patients.” Paper presented at the 22nd Annual Meeting of the Canadian Association of Radiation Oncology, Montreal, Canada, Sept 10–13, 2008

Peper, J., Schnack, H., Brouwer, R., van Baal, C., van Leeuwen, M., Collins, L., Holchuff-Pol, H. H. (2008, January). Heritability of brain structure at the onset of puberty: An MRI study in 9-year old twin-pairs. In Psychophysiology (Vol. 45, pp. S17-S17). 9600 GARSINGTON RD, OXFORD OX4 2DQ, OXON, ENGLAND: BLACKWELL PUBLISHING.

Tardif, C. L., Collins, D. L., & Pike, G. B. (2008). Voxel-based morphometry at 3 Tesla: which T1-weighted sequence is best?. In Proc. Intl. Soc. Mag. Reson. Med (Vol. 16, p. 1392).

2007

Arnold, D.L., Chen, J.T., Narayanan, S., Giacomini, P., Pike, G.B., and Collins, D.L.: Imaging degeneration and repair in MS. The Canadian endMS Research Conference. 2007

M. M. Chakravarty, B. Bedell, S. Zehntner, K. Hemmings, E. Hamel, A. Evans, and D. L. Collins, “P-105 three dimensional reconstruction of histological sections and correlations with MRI from transgenic models of Alzheimer’s disease,” Alzheimer’s and Dementia, vol. 3, no. 3 supplement, p. S132, 2007.

M. M. Chakravarty, D. L. Collins, S. Zehntner, K. Hemmings, C. Chan, A. Zijdenbos, E. Hamel, A. Evans, and B. Bedell, “O2–01–05 ex vivo molecular imaging in transgenic mouse models of Alzheimer’s disease,” Alzheimer’s and Dementia, vol. 3, no. 1 supplement, p. S183, 2007.

M. Mallar Chakravarty, D. Louis Collins, Simone P. Zehntner, Kurt Hemmings, Christopher Chan, Alex P. Zijdenbos, Edith Hamel, Alan C. Evans, and Barry J. Bedell. Ex vivo molecular imaging in transgenic mouse models of Alzheimer’s disease. Alzheimer’s Association International Conference on the Prevention of Dementia 2007, Washington DC, USA

M. Mallar Chakravarty, Barry J. Bedell, Simone P. Zehntner, Kurt Hemmings, Edith Hamel, Alan C. Evans, and D. Louis Collins. Three-dimensional reconstruction of histological sections and correlation with MRI from transgenic mouse models of Alzheimer’s disease. Alzheimer’s Association International Conference on the Prevention of Dementia 2007, Washington DC, USA.

M. Mallar Chakravarty, Scott Broadbent, Pedro Rosa-Neto, D. Louis Collins. Development of a novel vibrotactile stimulator. International Society for Magnetic Resonance in Medicine 2007. Berlin, Germany.

S. Duchesne, A. Caroli, C. Geroldi, G.B. Frisoni, D.L. Collins, “Automated baseline MRI features analysis can predict MMSE status in MCI at one-year follow-up”. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association, 2(3): 5688–5689, 2007

Shruti Nambiar, M. Mallar Chakravarty, Robert J. Funnell, D.Louis Collins. Nonlinear registration of histological images for 3-D middle-ear modeling. Proceeding of the Canadian Accoustics Society. 35(3): 78—9, 2007. Montreal, Canada

Pedro Rosa Neto, M. Mallar Chakravarty, D. Louis Collins, and Alan C. Evans. Ipsilateral suppression of the sensory thalamo-cortical circuit during unilateral vibrotactile hand stimulation. Organization for Human Brain Mapping 2007. Chicago, USA.

2006

Barry J. Bedell, Alex P. Zijdenbos, M. Mallar Chakravarty, Jonathon Lau, D. Louis Collins, and Alan C. Evans. An integrated technology platform for the Study of animal models of CNS disease. Organization for Human Brain Mapping 2006. Florence, Italy

M. Mallar Chakravarty, Abbas F. Sadikot, Sanjay Mongia, Gilles Bertrand, and D. Louis Collins. A digital atlas for functional neurosurgery: Derivation from high-resolution histological data and atlas-to-patient warping techniques. Proceedings of American Association for Neurosurgery 2006. San Francisco, USA.

Chen, J.T., Collins, D.L., Narayanan, S., Caramanos, Z., and Arnold, D.L. Using magnetization transfer ratio imaging to monitor in vivo myelin destruction and repair in lesions and normal-appearing brain tissue in multiple sclerosis: reproducibility assessment and results of immunoablation and autologous hematopoietic stem cell transplantation. Imaging Myelin: Formation, Destruction and Repair. Vancouver, British Columbia, Canada. 2006

Chen, J.T., Collins, D.L., Freedman, M.S., Atkins, H.L., and Arnold, D.L. Detection of subpial demyelination in vivo: methodology and evaluation in normal subjects and patients with MS. 22nd Congress of the European Committee for Treatment and Research in Multiple Sclerosis. (Multiple Sclerosis. 12(suppl 1): S181.) Madrid, Spain. 2006

Chen, J.T., Collins, D.L., Atkins, H.L., Freedman, M.S., Arnold, D.L. Detection of Subpial Cortical Demyelinating Lesions in Multiple Sclerosis In Vivo. The 14th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine. (Proceedings of the 14th Scientific Meeting and Exhibition of the International Society for Magnetic Resonance in Medicine. 14: 2094.) Seattle, Washington, USA. 2006

Chen, J.T., Collins, D.L., Freedman, M.S., Atkins, H.L., and Arnold, D.L. A mathematical description of the evolution of neurodegeneration after therapy in MS. Pathogenesis and Repair in MS Symposium. Cambridge, Massachusetts, USA. 2006

S. Duchesne, M. Chakravarty, D.L. Collins, C. Barillot, “Brainstem segmentation protocol”. Proc. MICCAI 2006 Workshop on Personalized Atlas, 2006

I.B. Kezele, V.S. Fonov, J.T. Chen, D.L. Arnold, and D.L. Collins, “Distance metrics to infer the dependence of atrophy on distance from lesions in multiple sclerosis,” in Int. Conf. on human Brain Mapping, (Florence), NeuroImage, 2006.

Abbas F. Sadikot, Sanjay Mongia, M. Mallar Chakravarty, Michel Panisset, D. Louis Collins. A novel probabilistic analysis of electrode positions in the subthalamic nucleus related to clinical outcome. Proceedings of American Association for Neurosurgery 2006. San Francisco, USA.

G Stroian, L Souhami, C Martens, DL Collins, J Seuntjens. Image Registration-Based Tool for Correlation Studies of Radiation-Induced Fibrosis and Local Dose-Related Parameters in Conformal Non-Small Cell Lung Cancer Radiation Therapy Medical Physics 05/2006; 33(6):2289–2289.

2005

C. Amiez, P. Kostopoulos, A. Champod, M. Petrides, R. Del Maestro, J. Doyon, and D.L. Collins, “Pre-, post-operative and follow-up fMRI evaluation of conditional motor associative function in patients with low-grade gliomas,” in 6th. Meeting of the European Association of Neuro-oncology (FECS), (Edinburgh, Scotland), p. 214, 2005.

C. Amiez, A. Champod, P. Kostopoulos, M. Petrides, D.L. Collins, J. Doyon, and R. Del Maestro, “New pre-operative fMRI and intra-operative tools for the assessment of higher cognitive functions in patients with gliomas,” in Canadian Congress of Neurological Sciences (CCNS), (Ottawa (Canada)), Canadian Journal of Neurological Sciences, 2005.

A. Champod, C. Amiez, P. Kostopoulos, M. Petrides, R. Del Mestro, J. Doyon, and D.L. Collins, “Development of an fMRIi protocol to assess mental rotation function in patients with brain tumours invading the parietal lobe,” in Human Brain Mapping, vol. 26 Suppl 1, (Toronto (Canada)), p. S41, NeuroImage, 2005.

A. Champod, C. Amiez, P. Kostopoulos, R. Del Maestro, M. Petrides, J. Doyon, and D.L. Collins, “Development of new fMRI and intra-operative tools for neurosurgery guidance in patients with brain tumours invading the parietal lobe,” in 2nd quadrennial meeting of the World Federation of NeuroOncology and 6th meeting of the European Association of Neuro-oncology (FECS), (Edinburgh,(Scotland)), p. 226, 2005.

J.T. Chen, S. Narayanan, D.L. Collins, M. Freedman, H. Atkins, and D. Arnold, “All enhancing voxels are not equal: quantifying destruction and repair with gadolinium enhancing lesions in multiple sclerosis,” in Proceedings of the International Society of Magnetic Resonance in Medicine, vol. poster 319, (Miami Beach), 2005.

J.T. Chen, D.L. Collins, M. Freedman, H. Atkins, and D. Arnold, “Evidence for acute brain “pseudo-atrophy” after treating MS with immunoablation followed by autologous stem cell transplantation,” in Proc. of the AAN, vol. 64 (Suppl 1), p. A393, 2005.

J.T. Chen, T. Kulmann, G.H. Jansen, D.L. Collins, M. Freedman, H. Atkins, A. Bar-Or, and d. Arnold, “Histopathological confirmation of voxel-based analysis of in vivo magnetization transfer ratio images to assess remyelination and demyelination following acute focal demyelination in multiple sclerosis,” in Proc. Of the AAN, (Suppl 1), p. S139, 2005.

S. Duchesne, J. Pruessner, S. Teipel, H. Hampel, and D. L. Colllins, “Successful AD and MCI differentiation from normal aging via automated analysis of MR image features,” in Alzheimer’s Association International Conference on Prevention of Dementia, (Washington, D.C.), 2005.

S. Duchesne, A. Caroli, C. Geroldi, G.B. Frisoni, D.L. Collins, “Automated baseline MRI features analysis can predict MMSE status in MCI at one-year follow-up”. Alzheimer’s & Dementia: The Journal of the Alzheimer’s Association 2(3 (Supplement)): S688-S689, 2006

S. Duchesne, K. De Sousa, C. Bocti, H. Chertkow, and D.L. Collins, “Predicting MCI progression to AD via automated analysis of T1 weighted MR image intensity,” in Alzheimer’s Association International Conference on Prevention of Dementia, (Washington, D.C.), 2005.

2004

Z. Caramanos, P. LeNezet, A. Matos, M. Tartaglia, G. S. Francis, S. Narayanan, D. L. Collins, and D. L. Arnold, “Mri evidence for primary degeneration of myelin and axones in patients with multiple sclerosis,” in International Society for Magnetic Resonance in Medicine ISMRM 12th Annual Scientific Meeting, vol. 2004 Proceedings on CD ROM, (Kyoto, Japan), p. 464, 2004.

J. T. Chen., D. L. Collins, M. S. Freedman, H. L. Atkins, and D. L. Arnold, “Measuring the potential for remylination and demylination in multiple sclerosis lesions,” in International Society for Magnetic Resonance in Medicine ISMRM 12th Annual Scientific Meeting, vol. 2004 Proceedings on CD ROM, (Kyoto, Japan), p. 464, 2004.

H. Hulshoff Pol, H. G. Schnack, R. C. Mandl, R. Brans, N. E. van Haren, W. F. C. Baare, C. van Oel, D. L. Collins, A. Evans, and R. S. Kahn, “Gray and white matter density changes in monozygotic and same-sex dizygotic twins discordant for schizophrenia: a voxel-based morphometry study,” in 10th Annual Meeting of the Organization for Human Brain Mapping, vol. 22, (Budapest, Hungary), p. MO348, NeuroImage, 2004.

I. Kezele, A. Janke, P. LeNezet, S. Prima, D. L. Arnold, and D. L. Collins, “Regional gm loss in rr and sp multiple sclerosis,” in 10th Annual Meeting of the Organization for Human Brain Mapping, vol. 22, (Budapest, Hungary), p. WE361, NeuroImage, 2004.

J. Lerch, J. Pruessner, A. Zijdenbos, D. L. Collins, S. J. Teipel, H. Hampel, and A. Evans, “Predicting alzheimer’s disease using cortical thickness,” in 10th Annual Meeting of the Organization for Human Brain Mapping, vol. 22, (Budapest, Hungary), p. MO359, NeuroImage, 2004.

F. Boada, D. L. Collins, I. Drobnjak, W. Eddy, A. Evans, M. Griffin, M. Jenkinson, D. Noll, G. Pike, H. Shi, D. Shroff, A.
Stenger, and K. Worsley, “Midas – a multi-site fmri simulator consortium,” in 10th Annual Meeting of the Organization for Human Brain Mapping, vol. 22, (Budapest, Hungary), p. WE249, NeuroImage, 2004.

2003

R. Aleong, S. Duchesne, D.L. Collins, T.Paus, “Assessment of Adolescent Body Perception: Development of a Novel Adolescent Body Morphing Tool”. CIHR 2nd Annual Research Award Recipient Symposia, CIHR, 2003

S.B. Antel, N. Bernasconi, D.L. Collins, R. Kearney, D. Arnold, and A. Bernasconi, “Automated detection of cortical dylsplasia based on textural, statistical and morphological analysis of MRI,” in Proceedings of the International Society of Magnetic Resonance in Medicine, vol. 1, (Toronto), 2003.

N. Bernasconi, S. Duchesne, A. Janke, D.L. Arnold, D.L. Collins, and A. Bernasconi, “Voxel-based statistical analysis of grey matter and white matter in patients with unilateral temporal lobe epilepsy,” in Proceedings of the International Conference on Human Brain Mapping, NeuroImage 5(4), Organization for Human Brain Mapping, 2003.

N. Bernasconi, S. Duchesne, A. Janke, D.L. Collins, A. Bernasconi, “Voxel-based statistical analysis of grey matter and white matter in patients with unilateral temporal lobe epilepsy”. NeuroImage 19(Suppl 1):575, 2003

A. Cachia, D. Rivière, Y. Cointepas, S. Robbins, I. Bloch, J. Régis, A. Evans, D.L. Collins, and J-F. Mangin, “Toward 2d morphometry of the cortical surface,” in Proceedings of the International Conference on Human Brain Mapping, NeuroImage 5(4), Organization for Human Brain Mapping, 2003.

Z. Caramanos, S, Francis, S. Narayanan, M. Tartaglia, A. Santos, R. Preto, D. Pelletier, D.L. Collins, Y. Lapierre, and D. Arnold, “ The paradox of primary progressive multiple sclerosis unsolved,” in 55th Annual Meeting Program, no. 60, American Academy of Neurology, 2003.

Z. Caramanos, D. Arnold, and D.L. Collins, “Measuring brain volume in patients with multiple sclerosis: a comparison of three common approaches,” in Proceedings of the International Society of Magnetic Resonance in Medicine, vol. 1, (Toronto), 2003.

J.T. Chen, S. Narayanan, D.L. Collins, S. Smith, P. Matthews, and D. Arnold, “Characterizing cortical grey matter in multiple sclerosis by MRI: relating CGM changes to disease course,” in Proceedings of the International Society of Magnetic Resonance in Medicine, vol. 1, (Toronto), 2003.

S. Duchesne, N. Bernasconi, A. Janke, A. Bernasconi, and D.L. Collins, “Within-group non-linear registration improves VBM results,” in Proceedings of the International Society of Magnetic Resonance in Medicine, vol. 1, (Toronto), 2003.

A. Janke, R. Renwick, M. Budge, J. Pruessner, and D.L. Collins, “Nonlinear multi-resolution symmetric registration in automated segmentation of sub and allo-cortical structures in MRI,” in Proceedings of the International Society of Magnetic Resonance in Medicine, vol. 1, (Toronto), 2003.

J-F. Mangin, J.Regis, D. Rivière, Y. Cointepas, T. Ochiai, D. Papadopoulos-Orfanos, D.L. Collins, and A.C. Evans, “Structure based morphometry of cortical folding correlates of handedness,” in proceedings of the International Conference on Human Brain Mapping, NeuroImage 5(4), Organization for Human Brain Mapping, 2003.

S. Narayanan, D.L. Collins, S. Francis, and D. Arnold, “Spinal cord cross-sectional area correlates with brain and intra-cranial volume,” in Proceedings of the International Society of Magnetic Resonance in Medicine, vol. 1, (Toronto), 2003.

S. Narayanan, S. Francis, D.L. Collins, M. Tartaglia, Y. Lapieere, and D. Arnold, “Towards a multimodal magnetic resonance surrogate for disability in multiple sclerosis,” in 55th Annual Meeting Program, no. 60, American Academy of Neurology, 2003.

2002 and earlier

S. Duchesne, N. Bernasconi, A. Bernasconi, D.L. Collins, “On the classification of Temporal Lobe Epilepsy based on MR image appearance”. Proc. International Conference on Pattern Recognition, IEEE Computer Society, 1: 520–523,2002

A. Janke, D.L. Arnold, Y. Lapierre, and D.L. Collins, “Brain volume change in multiple sclerosis detected with deformation-based morphometry,” in Tenth Scientific Meeting and Exhibition, (Honolulu, Hawai’i), p. 47, International Society for Magnetic Resonance in Medicine, 18–24 May 2002.

S. Kalra, A. Janke, D.L. Collins, and D.L. Arnold, “Voxel-based morphometry reveals primarily extra-motor abnormalities in amyotrophic lateral sclerosis,” in Tenth Scientific Meeting and Exhibition, (Honolulu, Hawai’i), p. 47, International Society for Magnetic Resonance in Medicine, 18–24 May, 2002.

S. Duchesne, J.C. Pruessner, D.L. Collins, “Apperance-based modeling and segmentation of the hippocampus from MR images”. Proc. 23rd Annual IEEE Engineering in Medicine and Biology Society Conference, IEEE EMB Society, Istanbul, Turkey, 2001

Collins, D.L., S. Narayanan, Z. Caramanos, N. De Stefano, M.C. Tartaglia, and D.L. Arnold. (2000). Relation of cerebral atrophy in multiple sclerosis to severity of disease and axonal injury. Neurology, 54(Suppl. 3), A17

D.L. Collins, N.J. Kabani, and A.C. Evans, “Automatic volume estimation of graoss cerebral structures,” in Fourth International Conference on Functional Mapping of the Human Brain (A.C. Evans, ed.,) NeuroImage, Organization for Human Brain Mapping, June 1998. abstract no. 0702.

D.L. Collins, A.P. Zijdenbos, and A.C. Evans, “Improved automatic gross cerebral structures,” in Fourth International Conference on Functional Mapping of the Human Brain (A.C. Evans, ed.), NeuroImage, Organization for Human Brain Mapping, June 1998. abstract no. 0707.

N.J. Kabani, D.L. Collins, and A.C. Evans, “A 3D neuroanatomical atlas,” in Fourth International Conference on Functional Mapping of the Human Brain (A.C. Evans, ed.), NeuroImage, Organization for Human Brain Mapping, June 1998. abstract no. 717.

G. Le Goualher, E. Procyk, D.L. Collins, M. Petrides, and A.C. Evans, “Sulcus extraction and automatic labelling (seal) : I. method for mapping of sulcal neuroanatomy,” in Fourth International Conference on Functional Mapping of the Human Brain (A.C. Evans, ed.), NeuroImage, Organization for Human Brain Mapping, June 1998. abstract no. 0729.

P. Neelin, J. Macdonald, D.L. Collins, and A. C. Evans, “The minc file format: From bytes to brains,” in Fourth International Conference on Functional Mapping of the Human Brain (A.C. Evans, ed.), NeuroImage, Organization for Human Brain Mapping, June 1998. abstract no. 0786.

E. Procyk, M. Petrides, G. Le Goualher, D.L. Collins, and A.C. Evans, “Sulcus extraction and automatic labelling (seal) : II. generation of frontal sulci probabilistic 3D maps,” in Fourth International Conference on Functional Mapping of the Human Brain (A.C. Evans, ed.), Organization for Human Brain Mapping, June 1998. abstract no. 0730.

W. Baaré, D.L. Collins, N. Kabani, D. MacDonald, C. Liu, M. Petrides, R. Kwan, and A.C. Evans, “Automated and manual identification of frontal lobe gyri,” in Third International Conference on Functional Mapping of the Human Brain (A. Gjedde, ed.), NeuroImage 5(4), p. S348, Organization for Human Brain Mapping.

J. Cao, K.J. Worsley, C. Liu, D.L. Collins, and A.C. Evans, “New statistical results for the detection of brain structural and functional change using random field theory,” in Third International Conference on Functional Mapping of the Human Brain (A. Gjedde, ed.), NeuroImage 5(4), Organization for Human Brain Mapping, 1997. abstract no. 512.

Z. Caramanos, R. Venugopal,D.L. Collins, D. MacDonald, A.C. Evans, and M. Petrides, “Human brain sulcal anatomy : An MRI-based study,” in Third international Conference on Functinoal Mapping of the Human Brain (A. Gjedde, ed.), NeuroImage 5(4), p. S350, Organization for Human Brain Mapping, 1997.

D.L. Collins, C. Holmes, and A.C. Evans, “High resolution digital phantom of the human brain,” in Third International Conference on Functional Mapping of the Human Brain (A. Gjedde, ed.), NeuroImage 5(4), Organization for Human Brian Mapping, 1997. abstract no. 510

A.C. Evans, D.L. Collins, C. Holmes, T. Paus, D. MacDonald, A.P. Zijdenbos, A. Toga, P. Fox, J. Lancaster, and J. Mazziotta, “A 3D probabilistic atlas of normal human neuroanatomy,” in Third International Conference on Functional Mapping of the Human Brain (A. Gjedde, ed.), NeuroImage 5(4), p. S349, Organization for Human Brain Mapping, 1997. abstract no. 349.

J. Sled, A. Zijdenbos, D.L. Collins, and A.C. Evans, “The impact of intensity non-uniformity on automated anatomical analysis of 3D fMRI images,” in Third International Conference on Functional Mapping of the Human Brain (A. Gjedde, ed.), NeuroImage 5(4), Organization for Human Brain Mapping, 1997. abstract no. 399.

D.L. Collins and A.C. Evans, “Automatic 3D estimation of gross morphometric variability in human brain,” in Second International Conference on Functional Mapping of the Human Brain (J. Belliveau, D. Kennedy, and B. Rosen, eds.), NeuroImage 3(3), p. 130, Organization for Human Brain Mapping, 1996.

C.J. Holmes, R. Hoge, D.L. Collins, and A.C. Evans, “Posthoc enhancement of MR signal using automatic registration,” in Second International Conference on Functional Mapping of the Human Brain (J. Belliveau, D. Kennedy, and B. Rosen, eds.), NeuroImage 3(3), p. S240, Organization for Human Brain Mapping, 1996.

D.L. Arnold, N. De Stefano, D.L. Collins, L. Fu, C. Wolfson, S. Narayanan, G. Francis, J. Antel, and A.C. Evans, “Imaging of axonal damage in multiple sclerosis,” in Forty-Sixth Annual Meeting of the American Academy of Neurology, Neurology 44, p.2, May 3–5, 1994.

L-Q. Fu, C. Wolfson, N. De Stefano, D.L. Collins, S. Narayanan, and D.L. Arnold, “Spatial statistics for investigation of metabolic changes in MR spectroscopic images of the brain of MS patients,” in Proceedings of the 2nd Annual Meeting, (San Francisco), p. 44, society of Magnetic Resonance, Aug. 1994.

D.L. Collins, L. Fu, E. Pioro, A.C. Evans, and D.L. Arnold, “Generation of average metabolite images from MRSI in stereotaxic space,” in Proceedings of the 12th Annual Meeting of the Society of Magnetic Resonance in medicine (SMRM), vol. 3, p. 1600, 1993.

A.C. Evans, and D.L. Collins, “A 305-member MRI-based stereotactic atlas for CBF activation studies,” in Proceedings of the 40th Annual Meeting of the Society for Nuclear Medicine, 1993.

M. Kamber, D.L. Collins, S. Narayanan, E. Pioro, A.C. Evans, and D.L. Arnold, “Tissue probability models in standardized brain space and the classification of MS plaques in MRI,” in Proceedings of the 12th Annual Meeting of the Society of Magnetic Resonance in Medicine (SMRM) p. 1600, 1993.

M. Kamber, R. Shingal, A.C. Evans, D.L. Collins, and G.S. Francis, “Experiments in the automated detection of multiple sclerosis brain lesions in magnetic resonance images,” in Proceedings of the Ninth IEEE Conference on Artificial Intelligence for Applications, p. 457, 1993.

M.C. Preul, D.L. Collins, J.G. Villemure, A.O.A, G. Mohr, R.L.R, R. Pokrupa, R. Ethier, and D.L. Arnold, “discrimination of human intracranial tumors in vivo using IH MR spectroscopic imaging and feature space for spectral pattern recognition,” in Can J Neurolog Sci, no. 20, p. S77, 1993. (K.G. McKenzie Prize, Canadian Congress of Neurological Sciences).

M. Preul, D.L. Collins, W. Feindel, and D.L. Arnold, “ Discrimination of human intracranial tumors in vivo using IH MR spectroscopic imaging,” in American Association for Cancer Research, 1993.

M.C. Preul, D.L. Collins, J.G. Villemure, W. Feindel, and D.L. Arnold, “Regional heterogeneity of human intracranial tumors studies with IH MR spectroscopic imaging,” in American Association of Neurological Surgeons, 1993.

M.C. Preul, D.L. Collins, W. Feindel, and D.L. Arnold, “Diagnosis of human intracranial tumors in vivo using IH MR spectroscopic imaging and feature space for spectral pattern recognition,” in American Association of Neurological Surgeons, 1993.

M. Preul, D.L. Collins, R. Ethier, W. Feindel, and D.l. Arnold, “Classification of major intracranial tumor types using IH MR spectroscopic imaging and feature space for spectral pattern recognition,” in Proceedings of the 12th Annual Meeting of the Society of Magnetic Resonance in Medicine, vol. 1, p. 64, 1993.

D.L. Arnold, G.T. Riess, P.M. Matthews, D.L. Collins, G. Francis, and J.P. Antel, “Quantitation of disease load and progression in multiple sclerosis by means of proton magnetic resonance spectroscopy,” in Proceedings of the 11th Annual Meeting, (Berlin, Germany), p. 1911, Society Magnetic Resonance in Medicine, Aug. 1992.

D.L. Arnold, G.T. Riess, P.M. Matthews, D.L. Collins, G. Francis, and J.P. Antel, “Quantitation of disease load and progression in multiple sclerosis by means of proton magnetic resonance spectroscopy,” in Neurology, no. 42, p. 1428, Apr. 1992.

D.L. Collins, A.M. Takahashi, and D.L. Arnold, “Determination of metabolic lesions size and severity on proton MR spectroscopic images using semi-automatic classification and mean distances in feature space,” in Proceedings of the 11th Annual Meeting of the Society of Magnetic Resonance in Medicine (SMRM), p. 427, 1992.

D.L. Collins, T.M. Peters, and A.C. Evans, “Automatic multiresolution registration of MRI volumetric data,” in Proceedings of the 11th Annual Meeting of the Society of Magnetic Resonance in Medicine (SMRM) p. 4214, 1992.

A.C. Evans, D.L. Collins, and B. Milner, “An MRI-based stereotactic atlas from 250 young normal subjects,” in Society for Neuroscience Abstracts, vol. 18, p. 408, 1992. Abstract no. 179.4.

G.S. Francis, A.C. Evans, D.L. Collins, and J.P. Antel, “Quantitative MRI measurement of lesion load in chronic progressive (CP) and relapsing-remitting (RR) sub-types of multiple sclerosis,” in American Academy of Neurology. 44th Annual Meeting Program, Neurology 42 (suppl 3), 1992.

A. Olivier, A. Cukiert, T.M. Peters, C.J. Henri, D.L. Collins, and D. Melançon, “Frameless ‘stereotaxy’ microsurgery for epilepsy,” Radiology, vol. 185, no. P, p. 398, 1992.

M.C. Preul, D.L. Collins, W. Feindel, and D.L. Arnold, “Metabolic characterization and discrimination of human intracranial tumours in vivo using proton spectroscopic imaging and classification in feature space,” in SMRM11: Society Magnetic Resonance in medicine 11th Annual Meeting, (Berlin, Germany), p. 1953, society Magnetic Resonance in medicine, Aug. 1992.

A.M. Takahashi, T.M. Peters, C.J. Henri, D.L. Collins, and D. Melançon, “Three dimensional acquisition and display of MR angiograms,” Radiology, vol. 185, p. 299, November 1992. Scientific exhibit 11–020.

D.L. Collins, W. Dai, S. Marrett, and A.C. Evans, “Three-dimensional non-linear warping of a computerized volume-of-interest brain atlas for morphometric analysis,” in Proceedings of the Annual Symposium on Information Processing in Medical Imaging (IPM I) (A.C.F. Colchester and D.J. Hawkes, eds.), (Heidelberg), Springer, 1991.

W. Dai, S. Marrett, D.L. Collins, and A.C. Evans, “Three-dimensional non-liner warping of a computerized volume-of-interestbrain atlas for morphometric analysis,” Journal of Cerebral Blood flow and Metabolism, vol. 11, no. suppl. 2, 1991.

W. Dai, D.L. Collins, T.S. Marrett, and A.C. Evans, “Three-dimensional warping of a computerized brain atlas,” in Annual Symposium of the IEEE Engineering in Medicine and Biology Society, (Orlando), June 1991.

G.S. Francis, D.L. Collins, S. Hum, J.P. Antel, and A.C. Evans, “Serial MRI evaluation of MS lesion volume,” in International Federation of Multiple Sclerosis Societies annual Meeting, 1991.

T.M. Peters, C.J. Henri, D.L. Collins, L. Lemieux, G.B. Pike, and A. Olivier, “Stereoscopic neurosurgery planning using integrated stereoscopic images,” in Proceedings of the 59th Annual Meeting of the American Association of Neurological Surgeons, vol. 74, p.400, American Association of Neurological Surgeons, 1991.

G. Bertrand, A. Olivier, T.M. Peters, C.J. Henri, D.L. Collins, and G.B. Pike, “Representation stéréoscopique combiniée d’images d’angiographie numérique et de tomodensitometrie ou de résonance magnetique en conditions stéréotactiques,” in Réunion annuelle, (Paris), Société de Neuro-Chirurgie de Langue Française, Juin 1990. abstract or non-refereed paper.

R. Ethier, T.M. Peters, G.B. Pike, D. L. Collins, and C.J. Henri, “ 3-dimensional mr: Vascular and stereotactic applications,” in 15th Annual Meeting of the Japanese Society of Magnetic Resonance in Medicine, (Japan), February 1990. abstract or non-refereed paper.

A.C. Evans, T.M. Peters, T.S. Marrett, D.L. Collins, G.B. Pike, C.J. Henri, and W. Dai, “3-D correlative imaging and segmentation of cerebral anatomy, function and angiography.” Poster in NATO Advanced Research workshop: 3D Imaging in Medicine, June 1990.

A.C. Evans, T.M. Peters, D.L. Collins, C.J. Henri, T.S. Marrett, G.B. Pike, and W. Dai, “3-D correlative imaging and segmentation of cerebral anatomy, function and vasculature,” in 12th Annual International Conference of IEEE Engineering in Medicine and Biology Society, (Philadelphia), pp. 1297–1298, IEEE, June 1990.

D.L. Collins, C. Henri, S. Marrett, and T. Peters, “Merging tomographic data with projection images using perspective volume rendering,” in Presented at Meeting of Canadian College of Physicists in Medicine, (University of Western Ontario, London, Ontario), Canadian Association of Physicists, June 1989.

D.L. Collins and C. Henri, “Overview of 3D brain imaging at the MNI,” in SIGMA: Special Interest Group on Medical Applications, (Mountain View, California), June 1989.

A.C. Evans, A. Nathens, M. Hogan, D.L. Collins, S. Marrett, and A. Hakim, “An interactive computerized region-of-interest atlas of the rat brain.” Abstract, May 1989. Presented at: International Symposium on Cerebral Blood flow and Metabolism, Bologna, Italy.

A.C. Evans, S. Marrett, D.L. Collins, and T.M. Peters, “Anatomical-functional correlative imaging in three dimensions.” Abstract, May 1989. Presented at: International Symposium on Cerebral Blood flow and Metabolism, Bologna, Italy.

A.C. Evans, S. Marrett, D. L. Collins, and T.M. Peters, “A customizable volume-of-interest (VOI) atlas for three dimensional PET data analysis.” Society of Nuclear Medicine Symposium, St. Louis, June 1989.

C. Henri, T. Peters, and D.L. Collins, “Interactive stereotactic neurosurgery planning on a PC-based stereoscopic workstation,” in London Workshop of the Canadian College of Physicists in Medicine, (University of Western Ontario in London, Ontario), Canadian Association of Physicists, June 1989.

C.J. Henri, D.L. Collins, T.M. Peters, and T.S. Marrett, “Accuracy of volumetric rendering for merging 3-D CT and MRI with DSA,” in RSNA’89, Radiological Society of North America, November 1989.

T.S. Marrett, D.L. Collins, G.B. Pike, S. Ku, T.M. Peters, and A.C. Evans, “Volumetric MRI/PET image correlation display and analysis,” in S.M.RM.M Eighth Annual Meeting, Society of Magnetic Resonance in Medicine, August 1989.

T. S. Marrett, D.L. Collins, A.C. Evans, and T. Peters, “A tool for volumetric PET/MRI image matching and display.” Society of Nuclear Medicine Symposium, St. Louis, July 1989.

T. M. Peters, G.B. Pike, J. Clark, D.L. Collins, C. Henri, A. Evans, S. Marrett, A. Olivier and O. Jeppsson, “Multi-modality 3-D imaging for stereotactic surgery planning.” Abstract, June 1989. Presented at Third International Symposium on Computer Assisted Radiology.

T.M. Peters, A.C. Evans, T. S. Marrett, and D.L. Collins, “Three-dimensional anatomical-physiological image correlation using a volume-of-interest atlas.” McLenehan Lecture, Australasian Society of Nuclear Medicine, August 1989.

T.M. Peters, A.C. Evans, T.S. Marrett, and D.L. Collins, “Three-dimensional anatomical/physiological image correlation using a volume-of-interest atlas,” in Lowenthal Lecture, (Christchurch, New Zealand), Australasian Society of Nuclear Medicine Annual Meeting, August 21, 1989. abstract.

T.M. Peters, C.J. Henri, D.L. Collins, A.C. Evans, and T.S. Marrett, “Three-dimensional visualization of medical images from multiple modalities,” in Engineering and the Physical Sciences in Medicine EPSM-89, (Hamilton NZ), August 28–31, 1989. abstract.

T.M. Peters, C.J. Henri, G.B. Pike, J.A. Clark, D.L. Collins, and A. Olivier, “Integration of stereotactic dsa with 3-d image reconstruction for stereotactic planning,” in X Meeting of the World Soc for Stereotactic and functional Neurosurgery, (Maebashi, Japan), Oct 3–5, 1989. abstract.

G.B. Pike, D.L. Collins, and T.M. Peters, “Volume rendering of 3-D magnetic resonance angiograms,” in Proceedings of the Eighth Annual Meeting, (Amsterdam), p. 868, society of Magnetic Resonance in Medicine, August 1989.

G.B. Pike, D.L. Collins, and T.M. Peters, “Inflow based three dimensional MR angiography,” in RSNA’89, Radiological Society of North America, November 1989.

G.B. Pike, D.L. Collins, and T.M. Peters, “3D magnetic resonance angiography,” in 31st Annual Meeting of AAPM, American Association of Physicists in Medicine, July 1989.

G.B. Pike, D.L. Collins, and T.M. Peters, “3D magnetic resonance angiography,” in Montreal Neurological Institute Fellows Day, (Montreal), May 1989. abstract or non-refereed paper.

G.B. Pike, D.L. Collins, and T.M. Peters, “Volumetric MRI/PET image correlation, display and analysis,” in Proceedings of the Eighth Annual Meeting, (Amsterdam), p. 261, society of Magnetic Resonance in Medicine, August 1989.

D.L. Collins, T. Peters, S. Marrett, and C. Henri, “Integration of stereoscopic angiography data with volume rendered 3-dimensional CT and MRI images (WIP),” in Radiology 1988 RSNA Scientific Program, (Chicago), p. 369, RSNA, Nov. 27-Dec. 2, 1988.

S. Marrett, A.C Evans, D.L. Collins, and T. Peters, “Three-dimensional MRI-PET correlative imaging in the human brain.” Abstract, November 1988. Radiological Society of North America.

T.M. Peters, A.C. Evans, D.L. Collins, S. Marrett, C.J. Henri, and G.B. Pike, “Multi-modality 3D brain imaging.” Abstract, Oct. 1988. Proceedings of the Terry Fox Workshop on digital Imaging Technology for Oncology.